1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAGGCCAGGACTTCTGTCCACACACTCTCCGACGTGGAGGGTCTGTGTGCCAAATATGCTTCTGCCCACGGCTCTTCCAGCCCTGTTGTGGCTGTTGAGgtatttaaaatctctctttttcgtttacttttgctgaactggatcacctcaaaacatttgttcctctctctctctctcgctgtgtgtgtgtgtgtgtgtacgtgcgcaaaatactcataaaaaaaatattcag
species | Physcomitrella patens |
transcript | PP1S89_154V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAAATATGCTTCTGCCCACGGCTCTTCCAGCCCTGTTGTGGCTGTTGAG AGGTTTTTGCATGAAGCTCCATACAACGCTGAAGAAATCGAGGACATCCTGEST: gi|162272814|gb|FC448802.1|FC448802
genomic: CCAAATATGCTTCTGCCCACGGCTCTTCCAGCCCTGTTGTGGCTGTTGAGgtatttaaaa ... aaatattcagAGGTTTTTGCATGAAGCTCCATACAACGCTGAAGAAATCGAGGACATCCTG
EST: TCCAGCCCTGTTGTGGCTGTTGAG AGGTTTTTGCATGAAGCTCCATACAACGCTGAAGAAATCGAGGACATCCTGEST: gi|208385544|gb|DC956700.1|DC956700
genomic: TCCAGCCCTGTTGTGGCTGTTGAGgtatttaaaa ... aaatattcagAGGTTTTTGCATGAAGCTCCATACAACGCTGAAGAAATCGAGGACATCCTG
EST: CCAAATATGCTTCTGCCCACGGCTCTTCCAGCCCTGTTGTGGCTGTTGAG AGGTTTTTGCATGAAGCTCCATACAACGCTGAAGAAATCGAGGACATCCTG
genomic: CCAAATATGCTTCTGCCCACGGCTCTTCCAGCCCTGTTGTGGCTGTTGAGgtatttaaaa ... aaatattcagAGGTTTTTGCATGAAGCTCCATACAACGCTGAAGAAATCGAGGACATCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCCAGGACTTCTGTCCACACACTCTCCGACGTGGAGGGTCTGTGTGCCAAATATGCTTCTGCCCACGGCTCTTCCAGCCCTGTTGTGGCTGTTGAGgtatttaaaatctctctttttcgtttacttttgctgaactggatcacctcaaaacatttgttcctctctctctctctcgctgtgtgtgtgtgtgtgtgtacgtgcgcaaaatactcataaaaaaaatattcag
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