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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATGTGAGTGATGTTGAGGACACAGCCATTGCAACATTTTGCGAGTCTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactccacttcgttctggaatatctttatcttttgtagagttattcatgcgtatcaagtcctgttttcgtctctgagtaattcgttcttcgtgtgtgaattcag

Basic information

species Physcomitrella patens
transcript PP1S83_223V6.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195485|gb|FC369342.1|FC369342
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|162266758|gb|FC442274.1|FC442274
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|37821284|gb|BJ579350.1|BJ579350
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|208392973|gb|DC945995.1|DC945995
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|162152132|gb|FC328722.1|FC328722
EST:     CTTAGGAATTTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAG
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|18337776|gb|BJ169800.1|BJ169800
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|162232988|gb|FC407875.1|FC407875
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|162278960|gb|FC454699.1|FC454699
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|208394076|gb|DC957157.1|DC957157
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|37837828|gb|BJ595836.1|BJ595836
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|208371461|gb|DC955797.1|DC955797
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|162151616|gb|FC327745.1|FC327745
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|208365825|gb|DC951060.1|DC951060
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|67692840|gb|BJ953073.1|BJ953073
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|162278961|gb|FC454700.1|FC454700
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
EST: gi|162198268|gb|FC372607.1|FC372607
EST:     CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGG                         ACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC
genomic: CTTACGAATCTGCGCACACCATGCAGGACCTTACAGCCAACATTGCAGGGgtatgcactc ... gtgaattcagACACTGGGAGTCAAAGCACCTCCAGTGCGGATCGACAGCCAAGCTAAGTAC