1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCTTACAGGACCATCTACGGTGATTTGGCGAAAGCTTTCCAGCCAAAAGGCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAGgttgtttttaatgcagcaacgatattgctcaaggcttcttaagaagaaattgtcgttttggctgcgtacgatgttgtggcttttcaaagttctgtataggcttgaattaaagtgtgtctatggtttttcttctgcag
species | Physcomitrella patens |
transcript | PP1S83_211V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCCTCANATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAG TTTTTTGGTATCAAAGATGGTGGATTGEST: gi|37821948|gb|BJ580014.1|BJ580014
genomic: GCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAGgttgttttta ... tcttctgcagTTTTTTGGTATCAAAGATGGTGGATTG
EST: GCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAG TTTTTTGGTATCAAAGATGGTGGATTGCCAGCACTTGTTGTTCAGGATAAAEST: gi|162276977|gb|FC453075.1|FC453075
genomic: GCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAGgttgttttta ... tcttctgcagTTTTTTGGTATCAAAGATGGTGGATTGCCAGCACTTGTTGTTCAGGATAAA
EST: GCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAG TTTTTTGGTATCAAAGATGGTGGATTGCCAGCACTTGTTGTTCAGGATAAAEST: gi|18341368|gb|BJ173403.1|BJ173403
genomic: GCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAGgttgttttta ... tcttctgcagTTTTTTGGTATCAAAGATGGTGGATTGCCAGCACTTGTTGTTCAGGATAAA
EST: CTGATTCAAAAGAGAACGACAACGCTGTGAAG TTTTTTGGTATCAAAGATGGTGGATTGCCAGCACTTGTTGTTCAGGATAAAEST: gi|208365894|gb|DC955469.1|DC955469
genomic: CTGATTCAAAAGAGAACGACAACGCTGTGAAGgttgttttta ... tcttctgcagTTTTTTGGTATCAAAGATGGTGGATTGCCAGCACTTGTTGTTCAGGATAAA
EST: GCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAG TTTTTTGGTATCAAAGATGGTGGATTGCCAGCACTTGTTGTTCAGGATAAA
genomic: GCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAGgttgttttta ... tcttctgcagTTTTTTGGTATCAAAGATGGTGGATTGCCAGCACTTGTTGTTCAGGATAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTACAGGACCATCTACGGTGATTTGGCGAAAGCTTTCCAGCCAAAAGGCCTCAAATTTCTCATAGCTGATTCAAAAGAGAACGACAACGCTGTGAAGgttgtttttaatgcagcaacgatattgctcaaggcttcttaagaagaaattgtcgttttggctgcgtacgatgttgtggcttttcaaagttctgtataggcttgaattaaagtgtgtctatggtttttcttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA