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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGGAGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaaccatttttttttaggttattttaaaattgttttttaatcgacttccgttcttcagaaaacaattatctcattctttttgagttaatcagct...

Basic information

species Physcomitrella patens
transcript PP1S83_162V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208347445|gb|DC909752.1|DC909752
EST:     AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG                         ATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
EST: gi|162240627|gb|FC419365.1|FC419365
EST:     AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG                         ATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
EST: gi|18356123|gb|BJ188182.1|BJ188182
EST:     AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG                         ATTGAAGGAGTCTTATCAAAA
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAA
EST: gi|162150536|gb|FC326392.1|FC326392
EST:     AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG                         ATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
EST: gi|18345693|gb|BJ177736.1|BJ177736
EST:     AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACG                         ATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA
genomic: AGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaac ... tatgtggcagATTGAAGGAGTCTTATCAAAAGCCGTGGATGAGCTTCGAACTCTACAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCCGGAGCTTGAGTTTGAGGTTCCGCCACAATCACAACGCGGGACACTCTCGACGgttagttaaccatttttttttaggttattttaaaattgttttttaatcgacttccgttcttcagaaaacaattatctcattctttttgagttaatcagct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaca