1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCGTCTCCGTGTTGTTACTGAGCTTCACCATGGAGATCTGTTCCACAGTTCTAATATTGTTTCAAGgtgccatatcttgaagccaagcctcttgttctttggtgctgtttttgaactccttgtttcgtagtaggttaagctcatgacctcgtaatatttcctacattgggggtttttcgttttgtaacggtcgagtttctcgtgttaattggtaatgtgttactctcgttactgatattgtaacatatcccttcacattttgaag
species | Physcomitrella patens |
transcript | PP1S81_234V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTGAGCTTCACCATGGAGATCTGTTCCACAGTTCTAATATTGTTTCAAG CATTGAATTTGATCGCGATGACGAGTTCTTTGCGACGGCGGGCGTATCACGEST: gi|162191463|gb|FC368207.1|FC368207
genomic: ACTGAGCTTCACCATGGAGATCTGTTCCACAGTTCTAATATTGTTTCAAGgtgccatatc ... cattttgaagCATTGAATTTGATCGCGATGACGAGTTCTTTGCGACGGCGGGCGTATCACG
EST: ACTGAGCTTCACCATGGAGATCTGTTCCACAGTTCTAATATTGTTTCAAG CATTGAATTTGATCGCGATGACGAGTTCTTTGCGACGGCGGGCGTATCACGEST: gi|162189555|gb|FC365777.1|FC365777
genomic: ACTGAGCTTCACCATGGAGATCTGTTCCACAGTTCTAATATTGTTTCAAGgtgccatatc ... cattttgaagCATTGAATTTGATCGCGATGACGAGTTCTTTGCGACGGCGGGCGTATCACG
EST: ACTGAGCTTCACCATGGAGATCTGTTCCACAGTTCTAATATTGTTTCAAG CATTGAATTTGATCGCGATGACGAGTTCTTTGCGACGGCGGGCGTATCACG
genomic: ACTGAGCTTCACCATGGAGATCTGTTCCACAGTTCTAATATTGTTTCAAGgtgccatatc ... cattttgaagCATTGAATTTGATCGCGATGACGAGTTCTTTGCGACGGCGGGCGTATCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGTCTCCGTGTTGTTACTGAGCTTCACCATGGAGATCTGTTCCACAGTTCTAATATTGTTTCAAGgtgccatatcttgaagccaagcctcttgttctttggtgctgtttttgaactccttgtttcgtagtaggttaagctcatgacctcgtaatatttcctacattgggggtttttcgttttgtaacggtcgagtttctcgtgttaattggtaatgtgttactctcgttactgatattgtaacatatcccttcacattttgaag
- - - - - - - - - GAGCTT
- - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - GAGATC