Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGTGGAGGATTATGCCCCGGAATCAATACTGTGATTCGTGAGATTGTCTGTGGTCTGTGGACGCAATATGGTGTGCGCGAAATCTTTGGTATTGATgtaagtaacaagccatccatcaaaaatgtcattcttttattgatctcgaatgttgcgtcactaccttttcagggttacgagtacatatgataactgcgtcaaatttaaacctggtttcaacaatgcatagtataataagtctttaataagtggaaaacgtaaagcttaactcgaaattacattgcgctctcag

Basic information

species Physcomitrella patens
transcript PP1S81_165V6.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S81_165V6.4 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA10G33820.1 (Glycine max), 5'ss of exon 5
AACTTGTGGAGGATTATGCCCCGGAATCAATACTGTGATTCGTGAGATTGTCTGTGGTCTGTGGACGCAATATGGTGTGCGCGAAATCTTTGGTATTGATgtaagtaacaagccatccatcaaaaatgtcattcttttattgatctcgaatgttgcgtcactaccttttcagggttacgagtacatatgataactgcgtcaaatttaaacctggtttcaacaatgcatagtataataagtctttaataagtggaaaacgtaaagcttaactcgaaattacattgcgctctcag
 |||||||||||||||||||| ||||| ||||| |||||| | || ||||| |||||  ||   |     |||  |||    || ||  |||| ||||| || |||     |  ||     || | | | ||     |||   | |  ||| |       ||  |||||     |||  ||   | ||||| | ||  | ||||                                                                                         
GACTTGTGGAGGATTATGCCCAGGAATTAATACAGTGATTAGGGAAATTGTATGTGGCTTGAACAACATGTATAATGTTGAAGATATACTTGGGATTGAGgtgagttttgtgaaatta--taatattctgatctgactatctgt-taaaatataatactccttgcttttgttaatta-aagactaaatgattattggtttaaat-----------------------------------------------------------------------------------------

upper sequence: PP1S81_165V6.4 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 5
AACTTGTGGAGGATTATGCCCCGGAATCAATACTGTGATTCGTGAGATTGTCTGTGGTCTGTGGACGCAATATGGTGTGCGCGAAATCTTTGGTATTGATgtaagtaacaagccatccatcaaaaatgtcattcttt---tattgatctcgaatgttgcgtcactaccttttcagggttacgagtacatatgataactgcgtcaaatttaaacctggtttcaacaatgcatagtataataagtctttaataagtggaaaacgtaaagcttaactcgaaattacattgcgctctcag
 || ||||||||||| |||||||||||||| || |||||||| ||||| || |||||  ||         |||||||| |  || ||  |||| ||||| ||  || |   |  | |  |     || || ||| ||   ||||  | |   |  |    | |    | ||  |   ||     |  || ||||   |   | |||   |                                                                                      
GACATGTGGAGGATTGTGCCCCGGAATCAACACAGTGATTCGGGAGATAGTATGTGGCTTGAATTATATGTATGGTGTTCATGATATACTTGGGATTGAGgttggttaatcgtgaactct-----atttccttccttaagtattatttttttaaatgatattatagtcatt--aaacttctttctttatgtgat---tttattaaaaaaa--------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162199151|gb|FC374597.1|FC374597
EST:     TCTGTGGTCTGTGGACGCAATATGGTGTGCGCGAAATCTTTGGTATTGAT                         GGAGGATACAAAGGATTTTACTCTCGGAACACAATCTCTCTCAATCCTAAA
genomic: TCTGTGGTCTGTGGACGCAATATGGTGTGCGCGAAATCTTTGGTATTGATgtaagtaaca ... gcgctctcagGGAGGATACAAAGGATTTTACTCTCGGAACACAATCTCTCTCAATCCTAAA
EST: gi|18361584|gb|BJ193650.1|BJ193650
EST:     TCTGTGGTCTGTGGACGCAATATGGTGTGCGCGAAATCTTTGGTATTGAT                         GGAGGATACAAAGGATTTTACTCTCGGAACACAATCTCTCTCAATCCTAAA
genomic: TCTGTGGTCTGTGGACGCAATATGGTGTGCGCGAAATCTTTGGTATTGATgtaagtaaca ... gcgctctcagGGAGGATACAAAGGATTTTACTCTCGGAACACAATCTCTCTCAATCCTAAA