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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATTTTAGGCCCGTTTTACGAGAATTGTTGTTGACGCATCGCGGTTTGGAATTTCTCCATGACACCCCGGAGTTTCAAGACAGATATGgcatgaattcttaaccgactttgcatgtgacattcagactcatttcgaatagatgacaaaaatatttgctccatgctggtattattaaatttatcctgtacaccacatcctgattctctgcacttgcatgatgttctatggtggtggacag

Basic information

species Physcomitrella patens
transcript PP1S7_163V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_163V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ20642 (Selaginella moellendorffii), 5'ss of exon 6
GAAGATTTTAGGCCCGTTTTACGAGAATTGTTGTTGACGCATCGCGGTTTGGAATTTCTCCATGACACCCCGGAGTTTCAAGACAGATATGgcatgaattcttaaccgactttgcatgtgacattcagactcatttcgaatagatgacaaaaatatttgctccatgctggtattattaaatttatcctgtacaccacatcctgattctctgcacttgcatgatgttctatggtggtggacag
|| ||||| |  ||  | ||    ||  | ||| |||| || ||||||||||||||||| |||||||| || ||||||||||| ||||||||         ||    || |||    |||   ||     |  | |||   |||| |        ||| ||   |  || | || ||   ||| | | | |                                                   
GAGGATTTCAAACCAATCTTGAAGGAGCTTTTGATGACTCACCGCGGTTTGGAATTTCTTCATGACACTCCTGAGTTTCAAGAAAGATATGg---------ttggttgatttttttagtgttgttt---ttgttgtcgctcagatcatt----ctttttctttgt-ttgcttttgttctttttgttc-gcag--------------------------------------------------

upper sequence: PP1S7_163V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ32791 (Selaginella moellendorffii), 5'ss of exon 6
GAAGATTTTAGGCCCGTTTTACGAGAATTGTTGTTGACGCATCGCGGTTTGGAATTTCTCCATGACACCCCGGAGTTTCAAGACAGATATGgcatgaattcttaaccgactttgcatgtgacattcagactcatttcgaatagatgacaaaaatatttgctccatgctggtattattaaatttatcctgtacaccacatcctgattctctgcacttgcatgatgttctatggtggtggacag
|| ||||| |  ||  | ||    ||  | ||| |||| || ||||||||||||||||| |||||||| || ||||||||||| ||||||||         ||  | || ||           || ||  |  |||    | |  |   |||  |||  ||   |  | || |  ||   ||  |  ||| | |                                                
GAGGATTTCAAACCAATCTTGAAGGAGCTTTTGATGACTCACCGCGGTTTGGAATTTCTTCATGACACTCCTGAGTTTCAAGAAAGATATGg---------ttggctgattt----------gtttagtttttttttttgttgtcgctcaaatcatt--ctttttctttgtttgcttttgttctttttgttcgcag----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155853|gb|FC332402.1|FC332402
EST:     TCGCGGTTTGGAATTTCTCCATGACACCCCGGAGTTTCAAGACAGATATG                         CTGAAACTGTAATATACAGAATATTCTACCATGTAAATAGAGCTGGGAATG
genomic: TCGCGGTTTGGAATTTCTCCATGACACCCCGGAGTTTCAAGACAGATATGgcatgaattc ... tggtggacagCTGAAACTGTAATATACAGAATATTCTACCATGTAAATAGAGCTGGGAATG