1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTGAAGGAACAAGGACCTCATGCATTCGCTGCCGCCCTTGCCCACCTCGCAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacacgcgcacactcacgcccacacacttgtactacatttgtgctttgaagtcttcttgaagttagtgaatatttacataacgtgttgtttcatcgacag
species | Physcomitrella patens |
transcript | PP1S7_15V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162151267|gb|FC327721.1|FC327721
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162163746|gb|FC340319.1|FC340319
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162157869|gb|FC334140.1|FC334140
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162179157|gb|FC355622.1|FC355622
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162196862|gb|FC373280.1|FC373280
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|100384084|gb|BY950470.1|BY950470
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162159081|gb|FC334057.1|FC334057
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162246601|gb|FC425194.1|FC425194
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162155296|gb|FC331740.1|FC331740
genomic: CACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162185653|gb|FC361533.1|FC361533
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACAEST: gi|162192967|gb|FC371950.1|FC371950
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
EST: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAG GGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
genomic: CAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacac ... tcatcgacagGGCGTGACGACACTTCGTTTGGTGCGACCTAGGGGTTCTCGACCTATGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGAAGGAACAAGGACCTCATGCATTCGCTGCCGCCCTTGCCCACCTCGCAGGCTTCACACAGCTTCCTACATCCCGCTCTCTTCTAACTCATGAAGAGgtataaacacgcgcacactcacgcccacacacttgtactacatttgtgctttgaagtcttcttgaagttagtgaatatttacataacgtgttgtttcatcgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA