1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCCAGCCAATTTTCAGGTCTACACAGCTCTCTTAAAGCCACACGAGCGCATAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcctaataaactctacctgtaccatcttttgccactcgcctcagagcgtcaattattatgtaccgctgctaaagatagcttatttatttatgtatagctgatgttttctccacttgccttacatctactggctctgttgtctgacatggtaaacag
species | Physcomitrella patens |
transcript | PP1S79_54V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG ACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCAEST: gi|162182305|gb|FC357176.1|FC357176
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG ACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCAEST: gi|100385980|gb|BY951174.1|BY951174
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG ACGGACATGAAGAANATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCAEST: gi|208379665|gb|DC903720.1|DC903720
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG ACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCAEST: gi|162155361|gb|FC331767.1|FC331767
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG ACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCAEST: gi|100392460|gb|BY953374.1|BY953374
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
EST: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAG ACGGACATGAAGAAAATCTCGGCGGNTTCCATTTTCTTCGAGACTATGCCA
genomic: TAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcc ... tggtaaacagACGGACATGAAGAAAATCTCGGCGGTTTCCATTTTCTTCGAGACTATGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAGCCAATTTTCAGGTCTACACAGCTCTCTTAAAGCCACACGAGCGCATAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcctaataaactctacctgtaccatcttttgccactcgcctcagagcgtcaattattatgtaccgctgctaaagatagcttatttatttatgtatagctgatgttttctccacttgccttacatctactggctctgttgtctgacatggtaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA