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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatattacaaaatcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag

Basic information

species Physcomitrella patens
transcript PP1S79_180V6.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 6
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatattacaaaatcatagggttccttatg--ctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
|||||| ||||||||||| ||||| ||||| |||||||| || ||||| || ||||| | |||||||||||| ||||||||  ||||||| ||  | |||||           |  |  |  | || |   |||||   |  |  |  | ||| | ||||      ||||  | ||  | ||    | || |   || || |  |||   | |  |                                                                               
TCAAATATTCGAAGGGCATTCTCACTATGTGATGCAAGTTACATTTAACCCAAAAGATACCAACACCTTTGCTAGTGCTTCCCTGGATCGCACAATAAAGgt------ttgtgtaatctctgctttaaaagttctg-gttggtcacaatgttgtattatt-tgtcgtcattagctttttcatagtttgatggtgatatcctaatttctgtctatcag------------------------------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 7
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatattacaaaatcatagggttccttatgctaatagctttaccccatatt-caagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
||||||||| || || |||||||| |||||||||||||| || ||||| ||||||||||  || || ||||| ||||||||| | ||||| ||||| |||||    ||||  |  |||   |  ||| ||||  || |  ||    |   ||    | || |    |  |||  ||    | || | |  ||||||   | ||| | ||                                                                                     
TCAAATTTTTGAGGGCCACTCTCACTATGTCATGCAAGTCACATTTAACCCCAAAGACACAAATACTTTTGCTAGTGCTTCTCTTGATCGTACTGTAAAGgta---tacccatatgttttat--tttgttttaatg-ataatgtattaatttctcgttttcctctttgctagccttaacga-gcaattttctttacttgaaatttctag-------------------------------------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 6
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatattacaaaatcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
|||||| || |||||||| ||||| ||||| |||||||| || ||||| || ||||| |  ||||||||||| ||||||||  ||||||| ||  | |||||              ||  ||  | |    ||    | |  | | || |    ||| || ||   | ||  ||| ||    |   | ||||||    ||||          ||  | | | |  | |   | | ||                                                        
TCAAATATTTGAAGGGCATTCTCACTATGTGATGCAAGTTACATTTAACCCAAAAGATACAAACACCTTTGCTAGTGCTTCCCTGGATCGCACAATAAAGgt--------------ttgtgttatctccgctttaaaaattctggttggcc-acaatgttgca---ttatttggtaccgacaggcgacagcttt--ttcatagcttgatggtgatatcctattttt-tgtcaatatcag------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatattacaaaatcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
 || || || ||||| || ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||| ||| | ||||| ||  | ||||||       | ||         |||  | || ||| | | ||   | | |  ||| |  | ||| | | | |      |||| |  ||    ||      ||| | |||||     ||| ||  | | ||                                                              
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtg------taatta-------tgttcttgttcctgga-tgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatccta-tgatataatgcattgatgcaactgttatcatctcttttcag--------------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 6
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatattacaaaatcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
 || || || ||||| || ||||||||||||||||||||||| ||||||||||||||||  ||||||||||| ||||| ||| | ||||| ||  | |||||    |     |    | | | |||   ||| ||    ||| |  ||  || |   |           | |  |||  | | |                                                                                                             
CCAGATATTTGAAGGCCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCTAGTGCATCTCTTGATCGGACAATAAAGgtagaattatgttcttgttcctggttg--tttcctatgatataa--tgcattaatgcacc-------tgttgtcttctcttttcag-----------------------------------------------------------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatat-tacaaa-atcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
 || || || || || || |||||||||||||||||||| || |||||||| |||||||  ||||||||||| ||||| ||| | ||||| ||  | ||||| |  |||  ||  ||||       || || | | | | |||  || | || |  |   ||||   || |||    |    | | ||||   || |    || |||||     |                                                                                
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgt-atatacatgt--gttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaag-taatgtattaatgttatcttcaattgcag--------------------------------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 6
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtat---tagctgtcttgaaatat-tacaaaatcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
 || || || || || || |||||||||||||||||||| || |||||||| |||||||  ||||||||||| ||||| ||| | ||||| ||  | ||||| |   |   |||  |   |    || | |  ||||| | |   |   | | |  ||| |  ||  | |  |         | ||| || ||   ||| |   | ||  ||                                                                                     
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgt-atacatgtgttcttcttgctagttgtgtc-ctgcattttctttgtttatttccaaacacctatgataaaaattaaaaagtaatg-tattaatgttatcttttcttgcag-------------------------------------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 10
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggt-accagttggttccgtcgtt-tatttttctgcagtattagctgtcttgaaatattacaaaat---catagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
||||||||||||||| || || |||||||| |||||||| || || || |||||||||| ||| || ||||| ||||| ||  | || || ||  | || || || | |    |    |     |||  |  ||  |     |||  |  | |   | ||| | ||  |   |||  | || | | |    | | |||| |    ||   |                                                                                       
TCAAATTTTCGAAGGCCATTCCCATTATGTTATGCAAGTCACTTTCAACCCCAAAGACACCAATACTTTTGCTAGTGCATCCCTTGACCGTACCATAAAAgtaagattagtcttcaacttttaagttacaccttcttctttcattcccaatttcccattatgagaagcttaacatttgttttcctgtatctacatcttttct---tacctag--------------------------------------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 6
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatattacaaaatcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
||| ||||| |||||||| ||||| || || |||||||| || |||||||| ||||||| |||||||||||||||||| ||  | ||||| ||| | |||||| |     |  || |||  |  |    | || || | |   || ||| ||  ||| |   ||  |      | |||||       |   ||||     | |                                                                                          
TCAGATTTTTGAAGGGCATTCTCACTACGTGATGCAAGTGACATTTAATCCAAAAGACACCAACACCTTTGCAAGTGCCTCCCTCGATCGCACTATAAAGgtgtgagtggaaatgtttct-tgataacctgttgtgaacttgaagatgtgtttcaatgtcctaatgtt-----gatccttccatagttgattttattgattgtgtg---------------------------------------------------------------------------------------

upper sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 6
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtatt-----agctgtcttgaaatattacaaaatcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag
||| || || || || |||||||||||||| |||||||| || |||||||| ||||| | |||||| ||||| ||||| ||| ||||||| ||  | |||||  | |     ||  ||| || |   | || |   | | |||     | |  | |||    || | |  || |  | | |  |||||||  |     || | | | ||| ||                                                                                     
TCAGATCTTTGAGGGCCACTCTCATTATGTGATGCAAGTGACATTTAATCCAAAAGATACCAACACTTTTGCTAGTGCATCTCTGGATCGCACCATTAAGgtatgatctggatt--ttctgttggcaacttgttaactgcatttttttaccaattttgcttcatca-agtatgagtgtgctatttatgctc-tgatgatatctccttttccag-------------------------------------------------------------------------------------