1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTAGCCTGCTGCGGATTTGAGTGTGGCGATGGTTGTGACGGTGGGTACCCCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAGgtactgtacctcagcttgtaccctgtgaacaaaaaattccacacagtcttcatatcatccttgttttgaacttattcttattagtctcaagaatcaaaga...
species | Physcomitrella patens |
transcript | PP1S79_128V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAG TGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCTEST: gi|100396641|gb|BY990226.1|BY990226
genomic: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAGgtactgtacc ... gtgtgtgcagTGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCT
EST: CATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGANCA-GCAAG TGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCEST: gi|18341383|gb|BJ173418.1|BJ173418
genomic: CATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGA-CAAGCAAGgtactgtacc ... gtgtgtgcagTGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCC
EST: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAG TGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCTEST: gi|100383576|gb|BY950360.1|BY950360
genomic: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAGgtactgtacc ... gtgtgtgcagTGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCT
EST: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAG TGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCTEST: gi|100369727|gb|BY967362.1|BY967362
genomic: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAGgtactgtacc ... gtgtgtgcagTGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCT
EST: CATCAGAGCCTGGCGATACTTCAAACGCACCGGAAGT-GTGACNAGCAAG TGTGACCCATACTTTGATCAGATAGEST: gi|100383471|gb|BY950255.1|BY950255
genomic: CATCAGAGCCTGGCGATACTTCAAACGCACCGGA-GTTGTGACAAGCAAGgtactgtacc ... gtgtgtgcagTGTGACCCATACTTTGATCAGATAG
EST: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAG TGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCTEST: gi|100382602|gb|BY986877.1|BY986877
genomic: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAGgtactgtacc ... gtgtgtgcagTGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCT
EST: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACTAGCAAG TGTGACCCATACCTTGATCAGATAGGATGCGGTCEST: gi|208363376|gb|DC946974.1|DC946974
genomic: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAGgtactgtacc ... gtgtgtgcagTGTGACCCATACTTTGATCAGATAGGATGCGGTC
EST: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAG TGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCT
genomic: CCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAGgtactgtacc ... gtgtgtgcagTGTGACCCATACTTTGATCAGATAGGATGCGGTCACCCAGGTTGCTACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTAGCCTGCTGCGGATTTGAGTGTGGCGATGGTTGTGACGGTGGGTACCCCATCAGAGCCTGGCGATACTTCAAACGCACCGGAGTTGTGACAAGCAAGgtactgtacctcagcttgtaccctgtgaacaaaaaattccacacagtcttcatatcatccttgttttgaacttattcttattagtctcaagaatcaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaat