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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTTGCCAATGCCAAATCCATCTCTTCTGCACAGTTTTTTGGTGATCAATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgcaacgttggtgtgcttgctgtctgtaatggctgttattagtgcactattgaggcaatgatctctgatcaatatgtgcatctcgttatagtggatgaggcgaacatgatgtgaacttggtgattattactgtatgcag

Basic information

species Physcomitrella patens
transcript PP1S795_4V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208370166|gb|DC951765.1|DC951765
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|208368245|gb|DC951511.1|DC951511
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATTTCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|208358641|gb|DC949976.1|DC949976
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|67696742|gb|BJ956975.1|BJ956975
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|208396541|gb|DC915853.1|DC915853
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|162221477|gb|FC397286.1|FC397286
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|67720059|gb|BJ970318.1|BJ970318
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|208362683|gb|DC947174.1|DC947174
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|162200943|gb|FC377346.1|FC377346
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|67695640|gb|BJ955873.1|BJ955873
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|67698195|gb|BJ958428.1|BJ958428
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|18334153|gb|BJ166169.1|BJ166169
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|162194335|gb|FC368518.1|FC368518
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|67572272|gb|BJ945096.1|BJ945096
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|37830194|gb|BJ588206.1|BJ588206
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|18335952|gb|BJ167973.1|BJ167973
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|18335829|gb|BJ167850.1|BJ167850
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: gi|37823009|gb|BJ581075.1|BJ581075
EST:     AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT                         AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC