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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTGGGCATGCTTACCACTCTTCTCTCTGTTGTGTACTCTGCTGTGCGCGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgttgtttggtccctgtgcagttatgattaatctgattttaactttgtgctttgtttatgcgatttttgtcatctccagttttatctgatcttc...

Basic information

species Physcomitrella patens
transcript PP1S78_51V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208380866|gb|DC923348.1|DC923348
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|162159385|gb|FC335173.1|FC335173
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACC-AATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTG
EST: gi|162226437|gb|FC402417.1|FC402417
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|162279685|gb|FC455398.1|FC455398
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|208364858|gb|DC957895.1|DC957895
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|208380518|gb|DC915420.1|DC915420
EST:     TCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: TCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|208359237|gb|DC954160.1|DC954160
EST:     CTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|208345443|gb|DC917340.1|DC917340
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|208370590|gb|DC948211.1|DC948211
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|162255916|gb|FC431992.1|FC431992
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|162272332|gb|FC449010.1|FC449010
EST:     CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: CGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
EST: gi|208358838|gb|DC957638.1|DC957638
EST:     TTCCTGTCCCCACCCAATTCTCCAAGAGAAG                         GATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG
genomic: TTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgtt ... ttgaattcagGATCATCTAAGAAGGCTCTTCTTGCAAAAGACGATGTTGAAGGAGCTCTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCTGGGCATGCTTACCACTCTTCTCTCTGTTGTGTACTCTGCTGTGCGCGCCGGTTCATCCACTACCTTCCTGTCCCCACCCAATTCTCCAAGAGAAGgtaacctgttgtttggtccctgtgcagttatgattaatctgattttaactttgtgctttgtttatgcgatttttgtcatctccagttttatctgatcttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA