1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGTGGGCATTGCGGTGGACTGCGAGTGGGGTGAGCCGATGACCGATTCTCCTGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTGgtatgaattttaactaatgcagatttctgaagtgcctcgctttctgagaaagccttgtgtgtcataggaggtgatcaaaccttctcatataatctcttatcgttctcatttttag
species | Physcomitrella patens |
transcript | PP1S76_8V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTG GTTTTTGGATCCAATATACTATGGCGATTATCCAGCAGTCATGCGCAAATAEST: gi|162258356|gb|FC434283.1|FC434283
genomic: CCTGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTGgtatgaattt ... tcatttttagGTTTTTGGATCCAATATACTATGGCGATTATCCAGCAGTCATGCGCAAATA
EST: TGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTG GTTTTTGGATCCAATATACTATGGCGATTATCCAGCAGTCATGCGCAAATAEST: gi|67727273|gb|BJ977532.1|BJ977532
genomic: TGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTGgtatgaattt ... tcatttttagGTTTTTGGATCCAATATACTATGGCGATTATCCAGCAGTCATGCGCAAATA
EST: CCTGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTG GTTTTTGGATCCAATATACTATGGCGATTATCCAGCAGTCATGCGCAAATAEST: gi|162224508|gb|FC399884.1|FC399884
genomic: CCTGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTGgtatgaattt ... tcatttttagGTTTTTGGATCCAATATACTATGGCGATTATCCAGCAGTCATGCGCAAATA
EST: CCTGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTG GTTTTTGGATCCAATATACTATGGCGATTATCCAGCAGTCATGCGCAAATA
genomic: CCTGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTGgtatgaattt ... tcatttttagGTTTTTGGATCCAATATACTATGGCGATTATCCAGCAGTCATGCGCAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGGGCATTGCGGTGGACTGCGAGTGGGGTGAGCCGATGACCGATTCTCCTGCAGATAAAGAAGCTGCAGAGCGACATGTGCTTTTCCAGTTGGGCTGgtatgaattttaactaatgcagatttctgaagtgcctcgctttctgagaaagccttgtgtgtcataggaggtgatcaaaccttctcatataatctcttatcgttctcatttttag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG