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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTGATCAGTGCCCTTGGTGATGATAAGAAGCGGAAGGAAGGAGGGCATGTCCCGTACCGTGATAGCAAACTCACTCGGTTGTTGCAGGCAAGTGCAgcctcttaagatacctgtagctgaatggttatgatctttacatttgggctagcttacttggttagcggactagatatttacacaacgtaggcatgatgcgagtactcttctaagaccattagcattcatctgcag

Basic information

species Physcomitrella patens
transcript PP1S74_30V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S74_30V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 6
---------AAATGTGATCAGTGCCCTTGGTGATGATAAGAAGCGGAAGGAAGGAGGGCATGTCCCGTACCGTGATAGCAAACTCACTCGGTTGTTGCAGG--CAAGTGCAgcctcttaa-----------gatacctgtagctgaatggttatgat--ctttacatttgggctagcttact-tggttagcggactag---atatttacaca-acgtaggcatgatgcgagtactcttctaagaccattagcattcat----ctgcag
          ||||| |||||||| ||||| ||||| || | ||| || ||||| |  ||||| || ||||||||||| ||||| |||||||| |||||||  ||  |  | | |   |            ||||  |||| |    |   ||| ||  || ||||| ||   |     ||| | ||      ||| |    ||  || ||| || || |  | ||| ||  | | ||| |  |    |  | || |     ||||||
TGCACTTGGTAATGTTATCAGTGCGCTTGGGGATGAGAAAAGGCGAAAAGAAGGTGCACATGTTCCATACCGTGATAGTAAACTTACTCGGTTATTGCAGgttcatttctatctttgcacttctacatcctgatatgtgtaacactgtacatattataactatacatatgatttgtaacactgtagtatctttactggcatttaactatacatacatatgattcatgtgacaaattttccattaaagatgtcctttacattactgcag

upper sequence: PP1S74_30V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv18s0001g07550.t01 (Vitis vinifera), 5'ss of exon 5
----------------------------------AAATGTGATCAGTGCCCTTGGTGATGATAAGAAGCGGAAGGAAGGAGGGCATGTCCCGTACCGTGATAGCAAACTCACTCGGTTGTTGCAGGCAAGTGCAgcctcttaagatacctgtagctgaatggttatgatctttacatttgggctagcttacttggttagcggactagatatttacacaacgtaggcatgatgcgagtactcttctaagaccattagcattcatctgcag
                                   || ||||| |||||| | || ||||| ||||||||||| |||||||| ||||| || || |||||||||||  | || ||  | || |||||| | | |    || || ||  || |   |      ||    |||||||||| |   |   | | |   |                                                                         
GAATTCATATTAATAAGGGATTGCTTGCTCTTGGCAACGTGATAAGTGCCTTGGGAGATGAGAAGAAGCGGAAAGAAGGAGGTCATgttccatatcgtgatagcaagttgacacgcctattacaggcatgagaa----ctaaatatttctttcctt------tttccctctttacattggatttg--tcagtgtatcg-----------------------------------------------------------------------

upper sequence: PP1S74_30V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ26093 (Selaginella moellendorffii), 5'ss of exon 6
---------AAATGTGATCAGTGCCCTTGGTGATGATAAGAAGCGGAAGGAAGGAGGGCATGTCCCGTACCGTGATAGCAAACTCACTCGGTTGTTGCAGGCAAGTGCAgcctcttaagatacctgtagctgaatggttatgatctttacatttgggctagcttacttggttagcggactagatatttacacaacgtaggcatgatgcgagtactcttctaagaccattagcattcatctgcag
         |||||| ||||||||  | || |||||||| || || || |||||||||||||| || ||  | |||||||||||||||||  | ||||||| |  ||  || |    || |   | |   ||    ||| |||     | |  || ||                                                                                      
AGCTCTTGGAAATGTCATCAGTGCTTTGGGAGATGATAAAAAACGTAAAGAAGGAGGGCATGTTCCTTATAGGGATAGCAAACTCACTCGTCTATTGCAGgtac-tgttgcgt----aggttttttttattgc---gttttgacaagaaaacctgtgcag------------------------------------------------------------------------------------

upper sequence: PP1S74_30V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ10856 (Selaginella moellendorffii), 5'ss of exon 6
---------AAATGTGATCAGTGCCCTTGGTGATGATAAGAAGCGGAAGGAAGGAGGGCATGTCCCGTACCGTGATAGCAAACTCACTCGGTTGTTGCAGGCAAGTGCAgcctcttaagatacctgtagctgaatggttatgatctttacatttgggctagcttacttggttagcggactagatatttacacaacgtaggcatgatgcgagtactcttctaagaccattagcattcatctgcag
         |||||| ||||||||  | || |||||||| || || || |||||||||||||| || ||  | |||||||||||||||||  | ||||||| |    | |   | || | |   | |   ||    ||| |||     | |  || ||                                                                                      
AGCTCTTGGAAATGTCATCAGTGCTTTGGGAGATGATAAAAAACGTAAAGAAGGAGGGCATGTTCCTTATAGGGATAGCAAACTCACTCGTCTATTGCAGgta----ctgttgcgtaggtttttttttattgc---gttttgacaagaaaacctgtgcag------------------------------------------------------------------------------------