1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCGCAAGATGGATTGCGAATCTTATTCGCAATGCTCGGTTGGATGCCAAGATCGATTCGAAGATGGGCACTGTTGTTATGGGCACTCAATCTCCGAATATgtacgtgatttttttacccatttgagagcattgcgttcattcttcgatccgtgattttttggtagaatgttttcggtagggctctgcagggatgttatct...
species | Physcomitrella patens |
transcript | PP1S73_26V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCGATTCGAAGATGGGCACTGTTGTTATGGGCACTCAATCTCCGAATAT ATACGAACAAATCATTGAGAAGACGAAGGTTCTTGGCCAGCGAAGTTATGCEST: gi|37848477|gb|BJ606485.1|BJ606485
genomic: ATCGATTCGAAGATGGGCACTGTTGTTATGGGCACTCAATCTCCGAATATgtacgtgatt ... catgtattagATACGAACAAATCATTGAGAAGACGAAGGTTCTTGGCCAGCGAAGTTATGC
EST: ATCGATTCGAAGATGGGCACTGTTGTTATGGGCACTCAATCTCCGAATAT ATACGAACAAATCATTGAGAAGACGAAGGTTCTTGGCCAGCGAAGTTATGCEST: gi|37849577|gb|BJ607585.1|BJ607585
genomic: ATCGATTCGAAGATGGGCACTGTTGTTATGGGCACTCAATCTCCGAATATgtacgtgatt ... catgtattagATACGAACAAATCATTGAGAAGACGAAGGTTCTTGGCCAGCGAAGTTATGC
EST: ATCGATTCGAAGATGGGCACTGTTGTTATGGGCACTCAATCTCCGAATAT ATACGAACAAATCATTGAGAAGACGAAGGTTCTTGGCCAGCGAAGTTATGC
genomic: ATCGATTCGAAGATGGGCACTGTTGTTATGGGCACTCAATCTCCGAATATgtacgtgatt ... catgtattagATACGAACAAATCATTGAGAAGACGAAGGTTCTTGGCCAGCGAAGTTATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCAAGATGGATTGCGAATCTTATTCGCAATGCTCGGTTGGATGCCAAGATCGATTCGAAGATGGGCACTGTTGTTATGGGCACTCAATCTCCGAATATgtacgtgatttttttacccatttgagagcattgcgttcattcttcgatccgtgattttttggtagaatgttttcggtagggctctgcagggatgttatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG