1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTGTTTTCAAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGGgtaggtcactaagatttcccggtcattgcttatatacacacacgttaacacaccagttgcacgcagaggaaatcagtggagagaattaaaatattttaaa...
species | Physcomitrella patens |
transcript | PP1S73_244V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGG AATTATCCGGGACATCATTCAGAATCATCTTGTACAGEST: gi|100389158|gb|BY952362.1|BY952362
genomic: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGGgtaggtcact ... ttcgctgcagAATTATCCGGGACATCATTCAGAATCATCTTGTACAG
EST: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGG AATTATCCGGGACATCATTCAGAATCATCTTGTACAGEST: gi|208398370|gb|DC912327.1|DC912327
genomic: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGGgtaggtcact ... ttcgctgcagAATTATCCGGGACATCATTCAGAATCATCTTGTACAG
EST: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGG AATTATCCGGGACATCATTCAGAATCATCTTGTACAG
genomic: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGGgtaggtcact ... ttcgctgcagAATTATCCGGGACATCATTCAGAATCATCTTGTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTTTTCAAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGGgtaggtcactaagatttcccggtcattgcttatatacacacacgttaacacaccagttgcacgcagaggaaatcagtggagagaattaaaatattttaaa
- - - - AAGGAG
- - - - - GGAGGA
- - - - - - - - - - - - CTGAAG