Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGGCAGGTTTAGCATCTGATGGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttgatgttcataccctcgcttcatctagatctttcacacaatgatctaaatggatgcgaagtgctttctaacctccctgtcatgaatctcttgtcacag

Basic information

species Physcomitrella patens
transcript PP1S72_57V6.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18335635|gb|BJ167655.1|BJ167655
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|37840289|gb|BJ598297.1|BJ598297
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208346631|gb|DC916897.1|DC916897
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|37844839|gb|BJ602847.1|BJ602847
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208367520|gb|DC954952.1|DC954952
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|18328383|gb|BJ160388.1|BJ160388
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAG
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAG
EST: gi|67569820|gb|BJ942644.1|BJ942644
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|67693091|gb|BJ953324.1|BJ953324
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|18327364|gb|BJ159366.1|BJ159366
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|162272069|gb|FC447863.1|FC447863
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|100443924|gb|BY982152.1|BY982152
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|162272070|gb|FC447864.1|FC447864
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|162267459|gb|FC444210.1|FC444210
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208371637|gb|DC932466.1|DC932466
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208369160|gb|DC956035.1|DC956035
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|37823184|gb|BJ581250.1|BJ581250
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208394276|gb|DC904096.1|DC904096
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208390148|gb|DC941955.1|DC941955
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208374326|gb|DC948386.1|DC948386
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208363378|gb|DC946976.1|DC946976
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208399219|gb|DC916574.1|DC916574
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|162209436|gb|FC386069.1|FC386069
EST:     CTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: CTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|37847181|gb|BJ605189.1|BJ605189
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|18343992|gb|BJ176031.1|BJ176031
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCAC
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGG-TGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCAC
EST: gi|208349231|gb|DC917995.1|DC917995
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|208357921|gb|DC943047.1|DC943047
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
EST: gi|18366790|gb|BJ198869.1|BJ198869
EST:     GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAG                         CTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA
genomic: GGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttga ... cttgtcacagCTTTTATGGTGAGGAGGTTCCTATCGGAGAACTTTGTGAACGTGTTGCACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAATGGCAGGTTTAGCATCTGATGGAAGACAGATAGTAACTAAAGCTCGCAGTGAAGCCTCAAGTTACCGAAGgtattgttgatgttcataccctcgcttcatctagatctttcacacaatgatctaaatggatgcgaagtgctttctaacctccctgtcatgaatctcttgtcacag

- - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC