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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCTgtaagtgcctcggactggagttccgaactttcattaacattgcctccgtcgtcgtcgtcgtcgtcgtctcgtcagggagtacttgaaatacgttttgaagttggagattagatccaggagtatgaactgtttgggattcattgaaacttttttgtgtatgattcctgccgattgttttgatggtttctcacag

Basic information

species Physcomitrella patens
transcript PP1S70_161V6.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67724914|gb|BJ975173.1|BJ975173
EST:     GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCT                         GCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
genomic: GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCTgtaagtgcct ... tttctcacagGCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
EST: gi|37843552|gb|BJ601560.1|BJ601560
EST:     GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCT                         GCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
genomic: GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCTgtaagtgcct ... tttctcacagGCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
EST: gi|37840839|gb|BJ598847.1|BJ598847
EST:     GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCT                         GCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
genomic: GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCTgtaagtgcct ... tttctcacagGCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
EST: gi|15727951|gb|BI740545.1|BI740545
EST:     GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCT                         GCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
genomic: GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCTgtaagtgcct ... tttctcacagGCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
EST: gi|162279794|gb|FC455702.1|FC455702
EST:     GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCT                         GCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC
genomic: GTGTAGATGATGACTTTGACAAAGACTTCGACAAACTCGTAAACAGCGCTgtaagtgcct ... tttctcacagGCTTTGGACAGTGATGGAGAGGAGGCTGCTCGTGAAGGCGCTAGAGGTAGC