1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTTTCTATCAATCCAGCCCTGAGAGAGCCAATGTCACCTCGAATCCGTGATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAGgttagtgttttcttttcttttcttttctttttttcttttttctttacctccaaatgatttcttagttaccaaaggtggccctctgtatcatagtccctta...
species | Physcomitrella patens |
transcript | PP1S70_117V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCATTCAAAAG GTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGATEST: gi|162197342|gb|FC372304.1|FC372304
genomic: AGCATTCAAAAGgttagtgttt ... acatttgcagGTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGAT
EST: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAG GTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGATEST: gi|162243951|gb|FC422306.1|FC422306
genomic: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAGgttagtgttt ... acatttgcagGTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGAT
EST: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAG GTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGATEST: gi|7047242|gb|AW477136.1|AW477136
genomic: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAGgttagtgttt ... acatttgcagGTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGAT
EST: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAG GTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGATEST: gi|162278218|gb|FC454453.1|FC454453
genomic: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAGgttagtgttt ... acatttgcagGTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGAT
EST: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAG GTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGATEST: gi|162150261|gb|FC326346.1|FC326346
genomic: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAGgttagtgttt ... acatttgcagGTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGAT
EST: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAG GTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGATEST: gi|67692924|gb|BJ953157.1|BJ953157
genomic: ATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAGgttagtgttt ... acatttgcagGTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGAT
EST: CACTCAAGCATTCAAAAG GTTCCTGCCNTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGAT
genomic: CACTCAAGCATTCAAAAGgttagtgttt ... acatttgcagGTTCCTGCCTTGATGTTGGACTGTGACACTAATATTGATTTCAACAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTCTATCAATCCAGCCCTGAGAGAGCCAATGTCACCTCGAATCCGTGATCGGGTGTTCTACCTGGAGGGTGACCATGTCCACTCAAGCATTCAAAAGgttagtgttttcttttcttttcttttctttttttcttttttctttacctccaaatgatttcttagttaccaaaggtggccctctgtatcatagtccctta
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