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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGAATAAGCCTTCACTTCATGGTATTCCATTGCTTGTGCTGGGTAACAAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcatcctcagattgcaagtgataaatactttgcaggagacggattaggagcattcctagacctttaagcttttagttcaaaatgtagacacaatttgctgatttatcctagcagaatagttatttcttctaatttttgattctttcggctttgtccgtgcttgttgatggctgtgtgatcacag

Basic information

species Physcomitrella patens
transcript PP1S6_409V6.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S6_409V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv00s0601g00030.t01 (Vitis vinifera), 5'ss of exon 5
TACTGAATAAGCCTTCACTTCATGGTATTCCATTGCTTGTGCTGGGTAACAAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagtt--catcctcagattgcaagtgataaatactttgcaggagacggattaggagcattcctagacctttaagcttttagttcaaaatgtagacacaatttgctgatttatcctagcagaatagttatttcttctaatttttgattctttcggctttgtccgtgcttgttgatggctgtgtgatcacag
| ||||  || || |||||  |||||||||| ||||| || ||||| ||||||||||||||||| |  ||| | || || || ||| | | |||  ||||||||||   |   ||   | | | |         || || |  ||      |||  | |           |      |     | || |   | |     | |   ||  || |  | | |        |    || |  |||                                                 
TGCTGAGCAAACCCTCACTGAATGGTATTCCTTTGCTGGTACTGGGAAACAAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggacgctctttcacttccatgacctggaacctttcttgaccaaatttaaaaactccatggtgaatgctgtatcagtatccatagcctggttttcaatatgtgcattgttttggtaatgagaacacca-ttatgctttgcag---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67699163|gb|BJ959396.1|BJ959396
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|208364105|gb|DC950397.1|DC950397
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|208382259|gb|DC919247.1|DC919247
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|162237116|gb|FC413275.1|FC413275
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|6167350|gb|AW145614.1|AW145614
EST:     GCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGNAGGTGGCATGCTACACCATTTCATG
genomic: GCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|162237115|gb|FC413274.1|FC413274
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|208368100|gb|DC947660.1|DC947660
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|162264751|gb|FC440318.1|FC440318
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|162264752|gb|FC440319.1|FC440319
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAAGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|208374248|gb|DC945294.1|DC945294
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
EST: gi|162203520|gb|FC380436.1|FC380436
EST:     AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAAT                         GGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG
genomic: AAAATCGACAAGCCTGAGGCTATCTCAAAGCAGGCTCTTATTGATCAAATgtaagttcat ... gtgatcacagGGACATAACAGGACTGAACGACAGGGAGGTGGCATGCTACACCATTTCATG