1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCCATGATTGATCCACATGACCTCCGCTATCAACAACCCGGTGATATGGATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggtttaaaagcggcagcattctttgtgactgaagtgatttctcgcaatctgcgtaaaccactggcatttctgttgggcgtctgtggcgctaagtcttatccgctgtttgcttaatgtgcag
species | Physcomitrella patens |
transcript | PP1S69_37V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTTEST: gi|162190734|gb|FC366996.1|FC366996
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
EST: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTTEST: gi|162191380|gb|FC368163.1|FC368163
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
EST: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTTEST: gi|162190735|gb|FC366997.1|FC366997
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
EST: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTTEST: gi|162198483|gb|FC375318.1|FC375318
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
EST: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAG GCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
genomic: ATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggttt ... taatgtgcagGCGTTAAATACAGATAAATATAACGCTTATATGTTGCAACAGCACCAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCATGATTGATCCACATGACCTCCGCTATCAACAACCCGGTGATATGGATTTCAATACTTACACAGCTCATCAGCATCAGTCAATGCCAATGACTCAGgttagggtttaaaagcggcagcattctttgtgactgaagtgatttctcgcaatctgcgtaaaccactggcatttctgttgggcgtctgtggcgctaagtcttatccgctgtttgcttaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA