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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTGCATTACTTCCTGCATGGATTCCATCACAAGCACCCAATGGACGGAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaattctcgccttcctcatcacttgagttggcatggttaacttttcagttggtcgtaattctcctgcaacagtgaattattacttgctcacaatcaaaggtctggtgacgccgtctctgctgtagtagctattcaagcgatcgagaggactggtgtgccatttgaaattgacgatgagctatgtttgcag

Basic information

species Physcomitrella patens
transcript PP1S69_244V6.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827009|gb|BJ585021.1|BJ585021
EST:     TTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
genomic: TTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
EST: gi|37829281|gb|BJ587293.1|BJ587293
EST:     GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
genomic: GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
EST: gi|208349200|gb|DC917978.1|DC917978
EST:     TAGTGTTTCCANCCGTCATAGCTGGCATTATTCTTGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
genomic: TAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
EST: gi|208395788|gb|DC920294.1|DC920294
EST:     GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
genomic: GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
EST: gi|37834513|gb|BJ592525.1|BJ592525
EST:     GAACCCGTNTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
genomic: GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
EST: gi|208356663|gb|DC922453.1|DC922453
EST:     GAACCCGTNTAGTGTTTCCACCCGTCATAGCTGGCANTATTCTNGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCNTCCTGGGGAGGCNTGCGAAG
genomic: GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
EST: gi|37828862|gb|BJ586874.1|BJ586874
EST:     GAACCCGTNTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
genomic: GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
EST: gi|208383531|gb|DC923683.1|DC923683
EST:     GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
genomic: GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
EST: gi|37825231|gb|BJ583297.1|BJ583297
EST:     GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCG                         ATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG
genomic: GAACCCGTCTAGTGTTTCCACCCGTCATAGCTGGCATTATTCTTGTCGCGgtcagaaatt ... atgtttgcagATCTGGTTTGTAACCGAGCCACTTGTGATCTTCCTGGGGAGGCCTGCGAAG