1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAAGGGTGCTGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgttcttattcccgtcctcttttatcttcaatatctgtgctggaccagaaggagaaatgtgtaatgtttattatgtatctgtttattaatctcttagtttgtttttggtcaaaatatatgtgatgagttctcagttttgacttttctgatctcttgtactgtag
species | Physcomitrella patens |
transcript | PP1S69_133V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37834827|gb|BJ592839.1|BJ592839
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAGTGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|67691964|gb|BJ952197.1|BJ952197
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37848068|gb|BJ606076.1|BJ606076
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGC-T-TGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|67701209|gb|BJ961442.1|BJ961442
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37830962|gb|BJ588974.1|BJ588974
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37850286|gb|BJ608294.1|BJ608294
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|18338176|gb|BJ170200.1|BJ170200
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|208382592|gb|DC919788.1|DC919788
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|67700323|gb|BJ960556.1|BJ960556
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|67701499|gb|BJ961732.1|BJ961732
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATCTCGACEST: gi|37844837|gb|BJ602845.1|BJ602845
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37843392|gb|BJ601400.1|BJ601400
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|208381709|gb|DC928372.1|DC928372
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37836841|gb|BJ594849.1|BJ594849
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37850916|gb|BJ608924.1|BJ608924
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGC-T-TGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37847199|gb|BJ605207.1|BJ605207
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37839648|gb|BJ597656.1|BJ597656
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGC-T-TGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37847556|gb|BJ605564.1|BJ605564
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGACACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37841081|gb|BJ599089.1|BJ599089
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37832636|gb|BJ590648.1|BJ590648
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37839037|gb|BJ597045.1|BJ597045
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37849929|gb|BJ607937.1|BJ607937
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37827635|gb|BJ585647.1|BJ585647
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37845211|gb|BJ603219.1|BJ603219
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37850132|gb|BJ608140.1|BJ608140
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|162152065|gb|FC328460.1|FC328460
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: GGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37822862|gb|BJ580928.1|BJ580928
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37830832|gb|BJ588844.1|BJ588844
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37852445|gb|BJ610453.1|BJ610453
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37827636|gb|BJ585648.1|BJ585648
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|162278634|gb|FC455032.1|FC455032
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|162278633|gb|FC455031.1|FC455031
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|18340944|gb|BJ172976.1|BJ172976
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37822569|gb|BJ580635.1|BJ580635
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|208392989|gb|DC946011.1|DC946011
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|67726731|gb|BJ976990.1|BJ976990
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|162248690|gb|FC424543.1|FC424543
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGACEST: gi|37827314|gb|BJ585326.1|BJ585326
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
EST: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAG TGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
genomic: TGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgt ... tgtactgtagTGTAAGTCGCTTGTGGCACAGTATGGCCCAATAGCACTCGCCGATATCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGGTGCTGGATGTGCTGATGAATGCTTGCAACCGTATTACTAATCACGTTGATGAGgtttggccgttcttattcccgtcctcttttatcttcaatatctgtgctggaccagaaggagaaatgtgtaatgtttattatgtatctgtttattaatctcttagtttgtttttggtcaaaatatatgtgatgagttctcagttttgacttttctgatctcttgtactgtag
- - - - - - - - GCTGAT