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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgctcttgtttctcaattttgacatgaatcttaactttatcagtcctgaatacgtaaaagttcaaatgtggatgacccacgattcttgtgcctacta...

Basic information

species Physcomitrella patens
transcript PP1S67_260V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os03g49770.2 (Oryza sativa), 5'ss of exon 6
CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgct--cttgtttctcaattttgacatgaatcttaactttatcagtcctgaatacgtaaaagttcaaatgtggatgacccacgattcttgtgcctacta
|||  | ||||||||||| |||||||| || || ||||| |||||||| ||| | || || ||| | || ||||| |||||||| || || |||| ||||||||  |  | | |||  |||        |  |||||   | | |           || | |||  |   || |                            
CAACCTAAAAAGCAAGTTCTGGGGTCGCTCCATTCAACTTGATCCTGTTGGTGTGCTAACCTTGGAGTTCGATGATGGTGAAGTTTTCCAGTGGAGCAAGgtaccattacatatttagcaagaagtggttagatctttggtctgtggaaataattcacttgaaatattctatctcag-------------------------

upper sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA06G16720.1 (Glycine max), 5'ss of exon 7
CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgc-tcttgtttctcaattttgacatgaatcttaactttatcagtc---ctgaatacgtaaaagttcaaatgtggatgacccacgattcttgtgcctacta-----------------------------
|||||| ||||| || |||||||||||||||||||| || |||||||| ||| |  | ||  |  |||||||||| || ||||| ||||| |||| |||||||    |  | || ||  || ||  ||  |  ||    | ||||| ||    | ||||  |||    |   || |   |  |   |  ||||| |    |||                              
CAATTTAAAAAGTAAATTTTGGGGTCGTTCAATCCAGCTTGATCCTGTTGGTTTATTGACCGTAGAATTTGATGATGGAGAAGTCTTTCATTGGAGCAAGgtatatatagttttactttatgttagcagtatactcgtatatatcaatctctttcaatat-taatccatttgatctaattttcaatctcttcttatatacactctgattagttaactcatattctatcatcag

upper sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA13G02610.1 (Glycine max), 5'ss of exon 8
CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgctcttgtttctcaattttgacatgaatcttaactttatcagtcctgaatacgtaaaagttcaaatgtgga-tgacccacgattcttgtgcctacta
||| || || || || ||||||||||| ||||| || || |||||||| || ||| | || ||| |||||||||| ||||||||||| || ||||  ||||||   | |   | || |   |     |  || ||  |   |  | | |||  | |    |  ||    | |  | ||         | || |  |     
CAACTTAAAGAGTAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATTCCAGTGGAGAAAGgtatattttaactgcttaccat--gtgtccat-ttgccacaacgaattctgtgtcc----agatttggttctaaactggtttggagcttttatttcag---

upper sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA14G33410.1 (Glycine max), 5'ss of exon 6
CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgctcttgtttctcaattttgacatgaatcttaactttatcagtcctgaatacgtaaaagttcaaatgtgga-tgacccacgattcttgtgcctacta
||| || || || || ||||||||||| ||||| || || |||||||| || ||| | || ||| |||||||||| ||||||||||  || ||||  ||||||   |    | | || | |   |  ||     || |  |        |   |  ||  |  ||    | |  | |||        | || | ||     
CAACTTAAAGAGTAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAGgtatatttaactgtttccactaccatgtgtccactatccatgaagaaaattg-tgtgttgagatttggttctaaactgatatggagcttttcttccag---

upper sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA04G43220.1 (Glycine max), 5'ss of exon 6
CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgctcttgtttctcaattttgacatgaatcttaactttatcagtcctgaatacgtaaaagttcaaatgtggatgacccacgattcttgtgcctacta
|||  | || ||||| |||||||| || ||||| |||||||| ||||| |||| | | || ||| ||||||||||||| || || || || |||| |||||||     |  | |||  |  | |  ||||       ||||    || || | | |  ||  |      | |    |                       
CAACCTAAAGAGCAAATTTTGGGGGCGATCAATTCAACTGGACCCTGTTGGTACTTTGACTTTGGAATTTGATGACGGGGAGGTTTTCCAGTGGAGCAAGgtatatattattctcttcaact-gctatgatatcctgctttg---gttctaatttctaaacggactcgttcttccag-----------------------

upper sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA04G38330.1 (Glycine max), 5'ss of exon 7
CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgc-tcttgtttctcaattttgacatgaatcttaactttatcagtcctgaatacgtaaaagttcaaatgtggatgacccacgattcttgtgcctacta---------------------------------
|||||| ||||| || ||||||||||||||||| ||||| ||||| || ||  |  | ||| |  ||||||||||||| ||||| || || |||| |||||||    |  | || ||  |  ||   | | ||  ||  | ||||| ||      | |  | | |   | | |  |  |  ||  |||||| |   |  ||                                 
CAATTTAAAAAGTAAATTTTGGGGTCGTTCAATTCAACTTGATCCCGTTGGATTATTGACGGTAGAATTTGATGACGGAGAAGTCTTCCATTGGAGCAAGgtatatatagttttacttgacgttagta-gtatactag-tatatcaatctcttccaagatacactctgattatcca--attcat-attcttttttttggtacatagctaattcatattcatattctatcatcag

upper sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ08416 (Selaginella moellendorffii), 5'ss of exon 7
CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgctcttgtttc-tcaattttgacatgaatcttaactttatcagtcctgaatacgtaaaagttcaaatgtggatgacccacgattcttgtgcctacta
|||| | || || || |||||||| ||||||||||| ||||| || || || ||| | || ||| |||| |||||||| ||||| ||||||||| | |||||| | ||      | |     |||   | |  |   |||| | |||                                                      
CAATCTAAAGAGTAAATTTTGGGGGCGTTCAATCCAGCTGGACCCCGTAGGAATTTTAACCTTGGAATTCGATGACGGAGAAGTTTTTCAATGGTCTAAGgta-gttcaaacggcatttggattggtctaacaccgtacttga-cag------------------------------------------------------