1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCGCACAACTAAGGTGAACTCGGGAATGGGTACAGGGACTATCACAAGCTTGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaacatgccttcattaagaacattcatccgaggtagtcaggctcgaagaagtgtgactatttctttgtttaatatcgccatttggagcatgttcacgctccgttgattacagctttgaatgtccacgtttctatcgtcatcatgttgtgcag
species | Physcomitrella patens |
transcript | PP1S65_2V6.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|67696186|gb|BJ956419.1|BJ956419
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|67508564|gb|BJ941427.1|BJ941427
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|208359473|gb|DC954026.1|DC954026
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|37843824|gb|BJ601832.1|BJ601832
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGNCTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|67696077|gb|BJ956310.1|BJ956310
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|67691781|gb|BJ952014.1|BJ952014
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|67692649|gb|BJ952882.1|BJ952882
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|162232654|gb|FC409205.1|FC409205
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCACEST: gi|37835112|gb|BJ593124.1|BJ593124
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
EST: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAG GAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
genomic: TGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaaca ... tgttgtgcagGAACCGCAATTGACGGCGAATGAGGCGTTTGACATTAACTCTCCTTTCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCACAACTAAGGTGAACTCGGGAATGGGTACAGGGACTATCACAAGCTTGATGGAGATGTTGGTATCAGGTGGTAGCCTGACTGGTGGTCTCACTCAGgtaagaaacatgccttcattaagaacattcatccgaggtagtcaggctcgaagaagtgtgactatttctttgtttaatatcgccatttggagcatgttcacgctccgttgattacagctttgaatgtccacgtttctatcgtcatcatgttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG