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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATGAGGAAAGAGAAGGAGATACTGATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatgatacttctaggtgcttattctctgtgtatcacattctgtcatgtttggaacagtttgggggttacggattttctgtcttactattttgtatgggacgtagatgataacctctgaaagtggtatggattggaacag

Basic information

species Physcomitrella patens
transcript PP1S62_239V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162272329|gb|FC449007.1|FC449007
EST:     ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAG                         GATTTTCTCACCATTTCTACAGGCAAG
genomic: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatga ... attggaacagGATTTTCTCACCATTTCTACAGGCAAG
EST: gi|161970310|gb|EE296263.1|EE296263
EST:     ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAG                         GATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
genomic: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatga ... attggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
EST: gi|162211735|gb|FC387399.1|FC387399
EST:     ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAG                         GATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
genomic: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatga ... attggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
EST: gi|162169515|gb|FC346079.1|FC346079
EST:     ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAG                         GATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT
genomic: ATACAGCACAAGCACCTGTTGCAGCGCCAGGCGCACCTCCTATTACCAAGgtactgatga ... attggaacagGATTTTCTCACCATTTCTACAGGCAAGAGAAAACACGATGAAATTTCCTCT