Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCAGATTTTGGAGTTTCTGCTCAGCTGACTCGTACAATGTCCAAACGCAAGgtcagttgacttctcaactgtatgtggctttttttgaaagagtagccttatccagcatattggaaccgagtctgtatgcggatgaaccatgtgagcggtttgttacgtggtcttaaaattggtgattttgtctaagaatgaaccgatttaattggaagtctgacatgtcgctgcag
Basic information
species | Physcomitrella patens |
transcript | PP1S59_173V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S59_173V6.2 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ15774 (Selaginella moellendorffii), 5'ss of exon 7
GTTGCAGATTTTGGAGTTTCTGCTCAGCTGACTCGTACAATGTCCAAACGCAAGgtcagttgacttctcaactgtatgtggctttttttgaaagagtagccttatccagcatattggaaccgagtctgtatgcggatgaaccatgtgagcggtttgttacgtggtcttaaaattggtgattttgtctaagaatgaaccgatttaattggaagtctgacatgtcgctgcag
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GTTGCAGATTTTGGTGTTTCTGCTCAGCTCACACGTACTGTGTCCAAGCGGAAAgtaagtt------ttaa---gatacacctttttataaggaagaagc-taactcgg--taacgaaatcag-----------------------------------------------------------------------------------------------------------
upper sequence: PP1S59_173V6.2 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ32910 (Selaginella moellendorffii), 5'ss of exon 7
GTTGCAGATTTTGGAGTTTCTGCTCAGCTGACTCGTACAATGTCCAAACGCAAGgtcagttgacttctcaactgtatgtggctttttttgaaagagtagccttatccagcatattggaaccgagtctgtatgcggatgaaccatgtgagcggtttgttacgtggtcttaaaattggtgattttgtctaagaatgaaccgatttaattggaagtctgacatgtcgctgcag
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GTTGCAGATTTTGGGGTTTCTGCTCAGCTCACACGTACTGTGTCCAAGCGGAAAgtaagttta----------agatacacctttttataaggaagaagc-taactcgg--taacgaaatcag-----------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100383755|gb|BY969284.1|BY969284EST: CAGATTTTGGAGTTTCTGCTCAGCTGACTCGTACAATGTCCAAACGCAAG ACATTTGTTGGAACTCCATTCTGGATGGCGCCAGAGGTCATACAGAACTCT
genomic: CAGATTTTGGAGTTTCTGCTCAGCTGACTCGTACAATGTCCAAACGCAAGgtcagttgac ... gtcgctgcagACATTTGTTGGAACTCCATTCTGGATGGCGCCAGAGGTCATACAGAACTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCAGATTTTGGAGTTTCTGCTCAGCTGACTCGTACAATGTCCAAACGCAAGgtcagttgacttctcaactgtatgtggctttttttgaaagagtagccttatccagcatattggaaccgagtctgtatgcggatgaaccatgtgagcggtttgttacgtggtcttaaaattggtgattttgtctaagaatgaaccgatttaattggaagtctgacatgtcgctgcag
- - - - - TTGGAG
- - - - - - - - - - - TCAGCT
- - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - AGCTGA