1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATGGATATGGGTGGGGGTAGCTGGGATCGTGACACTGTAGTGCGTGCATTACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcacgcttatcattctgtaactgtaaacgaaatttgtggatattgaatgatatattcgagtaacttcacacctcagatgtattgagtcatatat...
species | Physcomitrella patens |
transcript | PP1S58_148V6.4 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|162200956|gb|FC377359.1|FC377359
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|208368341|gb|DC935682.1|DC935682
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|67718144|gb|BJ968403.1|BJ968403
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|67718550|gb|BJ968809.1|BJ968809
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|67718192|gb|BJ968451.1|BJ968451
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|162158680|gb|FC335047.1|FC335047
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|162261438|gb|FC438274.1|FC438274
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|67717915|gb|BJ968174.1|BJ968174
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGAEST: gi|162150756|gb|FC327028.1|FC327028
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|208390566|gb|DC937498.1|DC937498
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|208389212|gb|DC933240.1|DC933240
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGG-CCGATCACCAGCA
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGATATGGGTGGGGGTAGCTGGGATCGTGACACTGTAGTGCGTGCATTACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcacgcttatcattctgtaactgtaaacgaaatttgtggatattgaatgatatattcgagtaacttcacacctcagatgtattgagtcatatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacgaaa