1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAATTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAGgtttgtaacttttgggggagtgctcttgtgaattaagttgatttacctggagtgtcttatgttttttgggagacacttgttcattgttgagttattttcaatagttaattcgtgttcatgctactgctatgcattggtaactttaagatagcatatggtctcgctgttgaacgtgtttggttgtctatcttcag
species | Physcomitrella patens |
transcript | PP1S56_222V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAG GAGAGCCCCGCGCCCGATTCAGAGGAGCTCTTCTCCCACATCTATCGGAAGEST: gi|67697180|gb|BJ957413.1|BJ957413
genomic: TTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAGgtttgtaact ... ctatcttcagGAGAGCCCCGCGCCCGATTCAGAGGAGCTCTTCTCCCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAG GAGAGCCCCGCGCCCGATTCAGAGGAGCTCTTCTCCCACATCTATCGGAAGEST: gi|162269474|gb|FC445342.1|FC445342
genomic: TTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAGgtttgtaact ... ctatcttcagGAGAGCCCCGCGCCCGATTCAGAGGAGCTCTTCTCCCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAG GAGAGCCCCGCGCCCGATTCAGAGGAGCTCTTCTCCCACATCTATCGGAAGEST: gi|208344991|gb|DC925401.1|DC925401
genomic: TTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAGgtttgtaact ... ctatcttcagGAGAGCCCCGCGCCCGATTCAGAGGAGCTCTTCTCCCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAG GAGAGCCCCGCGCCCGATTCAGAGGAGCTCTTCTCCCACATCTATCGGAAG
genomic: TTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAGgtttgtaact ... ctatcttcagGAGAGCCCCGCGCCCGATTCAGAGGAGCTCTTCTCCCACATCTATCGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATTGAGAAGGAGGCTAAGAAAGAAGTTGAAGACGCTCTTGCGAAGGCCAAGgtttgtaacttttgggggagtgctcttgtgaattaagttgatttacctggagtgtcttatgttttttgggagacacttgttcattgttgagttattttcaatagttaattcgtgttcatgctactgctatgcattggtaactttaagatagcatatggtctcgctgttgaacgtgtttggttgtctatcttcag
- - - - AAGGAG
- - - - - - - - - AAGAAA
- - - - - - - - - - AAAGAA
- - - - - - - - - - - AAGAAG
- - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - TGAAGA