1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGAGAACACAGAAGGTGATAGCTTTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAGgtaagagatctcgcctttgccatggcaaatctcttagagcagctgtgtcagtttctttggaaaaattaccattttgatgttaggttgaggaacagtagta...
species | Physcomitrella patens |
transcript | PP1S55_261V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAG CTGGAGCGGCTAGAAATAGCTTTCGACTCTATAAAGAGGCAGCTGTTCGGAEST: gi|18335149|gb|BJ167167.1|BJ167167
genomic: TTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAGgtaagagatc ... gtgttcgcagCTGGAGCGGCTAGAAATAGCTTTCGACTCTATAAAGAGGCAGCTGTTCGGA
EST: TTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAG CTGGAGCGGCTAGAAATAGCTTTCGACTCTATAAAGAGGCAGCTGTTCGGAEST: gi|37821009|gb|BJ579075.1|BJ579075
genomic: TTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAGgtaagagatc ... gtgttcgcagCTGGAGCGGCTAGAAATAGCTTTCGACTCTATAAAGAGGCAGCTGTTCGGA
EST: TTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAG CTGGAGCGGCTAGAAATAGCTTTCGACTCTATAAAGAGGCAGCTGTTCGGAEST: gi|18338516|gb|BJ170540.1|BJ170540
genomic: TTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAGgtaagagatc ... gtgttcgcagCTGGAGCGGCTAGAAATAGCTTTCGACTCTATAAAGAGGCAGCTGTTCGGA
EST: TTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAG CTGGAGCGGCTAGAAATAGCTTTCGACTCTATAAAGAGGCAGCTGTTCGGA
genomic: TTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAGgtaagagatc ... gtgttcgcagCTGGAGCGGCTAGAAATAGCTTTCGACTCTATAAAGAGGCAGCTGTTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAGAACACAGAAGGTGATAGCTTTGACCTATACTATGGGCTGTTCATGTACAACCCAAACGCTACTGAGGAGgtaagagatctcgcctttgccatggcaaatctcttagagcagctgtgtcagtttctttggaaaaattaccattttgatgttaggttgaggaacagtagta
- - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG