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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAACGCAAAAGAAATAGCCTTGGCCAAGCAGTTGAAAGCAATTGGCGCTAAAATGTACGGTGCATTTTGGTGCTCTCACTGTTTCGAGCAAAAGCAGgtgatacaaaatgaaaatgagatggttgcctgaaatttgatattttgttgcgcttttctttggaagtctcgtaattgtattttaagtctgaatcagcaaatttttgtaaactctaatgccatgccacctaggtctgaattgcagtgttttgggtttggttctcag

Basic information

species Physcomitrella patens
transcript PP1S55_203V6.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S55_203V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT4G35760.1 (Arabidopsis thaliana), 5'ss of exon 5
TTCAAACGCAAAAGAAATAGCCTTGGCCAAGCAGTTGAAAGCAATTGGCGCTAAAATGTACGGTGCATTTTGGTGCTCTCACTGTTTCGAGCAAAAGCAGgtgatacaaaatgaaaatgagatggttgcctgaaatttgatattttgttgcgcttttctttggaagtctcgtaattgtattttaagtctgaatcagcaaatttttgtaaactctaatgccatgccacctaggtctgaattgcagtgttttgggtttggttctcag
 || | | |  | |  || || || || || ||  | ||  | ||||| ||||||||||| || ||||| ||||| |||||||| || ||||||||  ||||  |  |        || |  || |||||   |||  | |      ||  |||||| ||    |   || | || ||    |   |||  |                                                                         
ATCGAGCCCTTATGCTATTGCTTTAGCAAAACATCTAAACTCCATTGGAGCTAAAATGTATGGGGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGgtagt-tagttcattcatcacctgtttgccaagaatcagtt------ttatgcttttatt--atatgttcattatagttccatccatctacag------------------------------------------------------------------------