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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTCCTCAAATGTCGAAGAAAAGCAGCAATGCGCAAGGGAGGATGAGGTCACTCTCCAGACTACGAAGTGGCCTGCTGTGTTTGAAATTAGAGACCAGgtgagaatttgtgtttacgttttctcatttctgcattgattcttaagaatgcagactcatcaagctactagccaagttcttaaattgtgtgtacatttgagctttgtgagaatcctatgagctactgaataatgcattttgaatgcag

Basic information

species Physcomitrella patens
transcript PP1S55_182V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162164248|gb|FC342063.1|FC342063
EST:     TCACTCTCCAGACTACGAAGTGGCCTGCTGTGTTTGAAATTAGAGACCAG                         AGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
genomic: TCACTCTCCAGACTACGAAGTGGCCTGCTGTGTTTGAAATTAGAGACCAGgtgagaattt ... ttgaatgcagAGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
EST: gi|162188189|gb|FC363955.1|FC363955
EST:     TCACTCTCCAGACTACGAAGTGGCCTGCTGTGTTTGAAATTAGAGACCAG                         AGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
genomic: TCACTCTCCAGACTACGAAGTGGCCTGCTGTGTTTGAAATTAGAGACCAGgtgagaattt ... ttgaatgcagAGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
EST: gi|162164247|gb|FC342062.1|FC342062
EST:     TCACTCTCCAGACTACGAAGTGGCNTGCTGTGTTTGAAATTAGAGACCAG                         AGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
genomic: TCACTCTCCAGACTACGAAGTGGCCTGCTGTGTTTGAAATTAGAGACCAGgtgagaattt ... ttgaatgcagAGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
EST: gi|37853399|gb|BJ611407.1|BJ611407
EST:     AAATTAGAGACCAG                         AGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
genomic: AAATTAGAGACCAGgtgagaattt ... ttgaatgcagAGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
EST: gi|162188188|gb|FC363954.1|FC363954
EST:     TCACTCTCCAGACTACGAAGTGGCCTGCTGTGTTTGAAATTAGAGACCAG                         AGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT
genomic: TCACTCTCCAGACTACGAAGTGGCCTGCTGTGTTTGAAATTAGAGACCAGgtgagaattt ... ttgaatgcagAGCACTCCCGACGGATATGCAGACAGCTGTCGACATGCATTTGCAGAAGAT