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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAAGGCCTTTCTGGTACGGGTTCTCTTCGCTTGGGTGCTGCTTTCATTCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGGgtaagacaaagatttattatgtttcaatttttataatttttgacgtaaaatttatttgtggagaattcttttccaaaattttctctattgttctgatgcatctacttcaacag

Basic information

species Physcomitrella patens
transcript PP1S540_7V6.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S540_7V6.3 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ26197 (Selaginella moellendorffii), 5'ss of exon 4
GTCCAAGGCCTTTCTGGTACGGGTTCTCTTCGCTTGGGTGCTGCTTTCATTCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGGgtaagacaaagatttattatgtttcaatttttataatttttgacgtaaaatttatttgtggagaattcttttccaaaattttctctattgttctgatgcatctacttcaacag
|||||||| || ||||| ||||||||||| |||||||||||||| || |||  | | ||||| |||||| | |  |||   || || ||||| || |||||||||          |  |  |||| | |   |  | ||| |     |  |   ||||| |                                                    
GTCCAAGGTCTGTCTGGAACGGGTTCTCTGCGCTTGGGTGCTGCCTTTATTGCAAGATACTTTCCTGGCGTTAAGGTTCTTATTTCGTCTCCTACATGGGgtaag---------caccacatttctagtgacaacagtttggttaccacttacgtttgtag----------------------------------------------------

upper sequence: PP1S540_7V6.3 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ05582 (Selaginella moellendorffii), 5'ss of exon 4
GTCCAAGGCCTTTCTGGTACGGGTTCTCTTCGCTTGGGTGCTGCTTTCATTCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGGgtaagacaaagatttattatgtttcaatttttataatttttgacgtaaaatttatttgtggagaattcttttccaaaattttctctattgttctgatgcatctacttcaacag
|| ||||| || ||||| ||||||||||| |||||||||||||| || |||  | | ||||| |||||| | |  |||   || || ||||| || |||||| ||      |||| ||| ||  |||   || |  ||  | ||    | ||||| | || ||                                                  
GTTCAAGGTCTGTCTGGAACGGGTTCTCTGCGCTTGGGTGCTGCCTTTATTGCAAGATACTTTCCTGGCGTTAAGGTTCTTATTTCGTCTCCTACATGGGgtgagcagctcatttctta-gtgacaacagtt-tgtttacttacc---actttatctttgtag--------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100359406|gb|BY984238.1|BY984238
EST:     TCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGG                         GAAAACACAAGAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACC
genomic: TCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGGgtaagacaaa ... acttcaacagGAAACCACAAGAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACC
EST: gi|100361559|gb|BY984067.1|BY984067
EST:     TCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGG                         GAAACCACAAGAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACC
genomic: TCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGGgtaagacaaa ... acttcaacagGAAACCACAAGAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACC
EST: gi|162217709|gb|FC393801.1|FC393801
EST:     TCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGG                         GAAACCACAAGAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACC
genomic: TCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGGgtaagacaaa ... acttcaacagGAAACCACAAGAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACC
EST: gi|162172938|gb|FC348943.1|FC348943
EST:     TCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGG                         GAAACCACAAGAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACC
genomic: TCAACGTTACTTCCCTGGCATCACCGTTTACATCTCTTCTCCAACTTGGGgtaagacaaa ... acttcaacagGAAACCACAAGAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACC