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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAGgtaacattcctcattgattaccttgattatctggaagcagtcgggcgtgtcttgggtgggtttttgtctcgcagattactgaagtgatcatgtgccagtctgtgttgatagatgtatttctgatatccagtatgcggtgtctttgggtcccag

Basic information

species Physcomitrella patens
transcript PP1S52_69V6.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S52_69V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os01g16040.1 (Oryza sativa), 5'ss of exon 4
GTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAGgtaacattcctcattgattaccttgattatctggaagcagtcgggcgtgtcttgggtgggtttttgtctcgcagattactgaagtgatcatgtgccagtctgtgttgatagatgtatttctgatatccagtatgcggtgtctttgggtcccag
||| ||||  |  | |||||||||||||||||||| ||| ||||||| ||||||||||| | |   |  | |      ||| || |||       ||||       | ||   ||| ||  ||||      ||| |  | ||       |  || || |                                                   
GTTATCCGCATAGTTCCTTACAGTGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGgtgataacgccaact------ctttatcatc-------agtcaattacctattt--tggattcctgtcatttcaatttcc-atgtacctgctttgcattcag---------------------------------------------------

upper sequence: PP1S52_69V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA03G08120.1 (Glycine max), 5'ss of exon 4
GTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAGgt-aacattcctcattgattaccttgattatctggaagcagtcgggcgtgtcttgggtgggtttttgtctcgcagattactgaagtgatcatgtgccagtctgtgttgatagatgtatttctgatatccagtatgcggtgtctttgggtcccag
||  | || || |||||||||||||| || || ||||||||||||||  |||||||||| | |  |     ||  || | |  |||   |     || |   || |||    |      || |   |      |||  |                                                                        
GTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAGgttagctgttaaactttctttcatgaatttcttttccccaatattgcatgttcatgactaagttatacttttggatttatag------------------------------------------------------------------------

upper sequence: PP1S52_69V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA18G42950.1 (Glycine max), 5'ss of exon 5
GTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAGgtaacattcctcattg-attaccttgattatctggaagcagtcgg-gcgtgt-cttgggtgggtttttgtctcgcagattactgaagtgatcatgtgccagtctgtgttgatagatgtatttctgatatccagtatgcggtgtctttgggtcccag
||  |||||||  ||||||||||||| || || ||||||||||||||| |||| ||||| ||   ||  |||  | || |   | | |||    |||       | ||| | ||  ||  | | |   |      | || |                                                                        
GTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAGgttac--cccaaattatagtatcagaagt-tctaatggcaaatattacctgttcatgtctgaatatctacttttggattcacag------------------------------------------------------------------------

upper sequence: PP1S52_69V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAGgtaacatt-cctcattgattaccttgattatctggaagcagtcgggcgtgtcttgggtgggtttttgtctcgcagattactgaagtgatcatgtgccagtctgtgttgatagatgtatttctgatatccagtatgcggtgtctttgggtcccag
||  |  | ||  |||||||||||||||| || ||||| |||||||||  ||||||||| |  ||   ||||  ||  | |  |||  ||    | | |      |||  |     |   |     |    ||||  |  |   ||  |||  |    |||  |   |                                           
GTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTATGAGAGTTACAAGgtgagtttgtgtcatctatagctt--attggctattgggatt-----atgtactaaagagaaatagaaat----gattgttataa-aattctgtagctacttgtcctagaaa------------------------------------------