1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATGCCGTCTAGCCCCACTCCACGATCCACCCAAGGTTATCCAGCTACAGTTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtttataatttctcaccttcttggaattgcatctcagtacttatttcgcaatgccaacgacgttctgaaatgtctacactttgcactgttctgaagttctggaatgctgaacatagtttactttgcacattgtttcatag
species | Physcomitrella patens |
transcript | PP1S51_178V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162192792|gb|FC369630.1|FC369630
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCNTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|208372882|gb|DC956283.1|DC956283
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162231249|gb|FC407023.1|FC407023
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162186811|gb|FC363055.1|FC363055
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTTTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162170259|gb|FC347379.1|FC347379
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162170260|gb|FC347380.1|FC347380
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162204865|gb|FC381196.1|FC381196
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|208388866|gb|DC945442.1|DC945442
genomic: TAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACACTCATATGTTCTGTEST: gi|162175654|gb|FC351241.1|FC351241
genomic: TCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162204879|gb|FC381197.1|FC381197
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGEST: gi|67723820|gb|BJ974079.1|BJ974079
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGG
EST: CTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGAAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162231250|gb|FC407024.1|FC407024
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162200058|gb|FC376520.1|FC376520
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGTEST: gi|162200059|gb|FC376521.1|FC376521
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
EST: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGA GTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
genomic: TTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtt ... tgtttcatagGTGGAAGTGAGGAAAAGAGAAGGTCAGGCCCTCAACATTCATATGTTCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCCGTCTAGCCCCACTCCACGATCCACCCAAGGTTATCCAGCTACAGTTAAAGAAGAATGCCCCGTCTTGCCGAATCCTGAATCCCAGCCTCCTCGAgtatgttgtttataatttctcaccttcttggaattgcatctcagtacttatttcgcaatgccaacgacgttctgaaatgtctacactttgcactgttctgaagttctggaatgctgaacatagtttactttgcacattgtttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC