Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatctttaccgcttccacagaacttgaaaagctttcaccttcagttcattttcctcatttgtgaaacagctttccagtgaagtcacttccgagttctgaaagcggactggaatatgccgatctgcgcag

Basic information

species Physcomitrella patens
transcript PP1S4_12V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162178865|gb|FC354797.1|FC354797
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|162159187|gb|FC334358.1|FC334358
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|67571702|gb|BJ944526.1|BJ944526
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAAC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAAC
EST: gi|100375450|gb|BY948872.1|BY948872
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|67568839|gb|BJ941663.1|BJ941663
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|162175775|gb|FC352077.1|FC352077
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|18354475|gb|BJ186531.1|BJ186531
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCA
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCA
EST: gi|162198744|gb|FC374227.1|FC374227
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|18348776|gb|BJ180825.1|BJ180825
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|208351568|gb|DC909998.1|DC909998
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|162257953|gb|FC433839.1|FC433839
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|162185024|gb|FC362470.1|FC362470
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|67717090|gb|BJ967349.1|BJ967349
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|100437911|gb|BY961558.1|BY961558
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|18363906|gb|BJ195978.1|BJ195978
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|18368891|gb|BJ200976.1|BJ200976
EST:     CGGTGCATTCATTCTGACCGCCAGCCACAACCCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGG
genomic: CGGTGCATTCATTCTGACCGCCAGCCACAACCCC-GGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGG
EST: gi|67570443|gb|BJ943267.1|BJ943267
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|18347743|gb|BJ179790.1|BJ179790
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
EST: gi|162276463|gb|FC452466.1|FC452466
EST:     ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAG                         GACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC
genomic: ACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGTGGTCCCGACGAGgtaacccatc ... atctgcgcagGACTTTGGAATCAAGTACAATTGTGAAAACGGAGGCCCAGCTCCTGAAAGC