1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAAgttcgtctcttaccctcaaaagctgagacttttagccactgttttatagattagggtggtgattcctgcttgtgactgaccttttaccattgcaacatag...
species | Physcomitrella patens |
transcript | PP1S49_289V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAA GTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGGEST: gi|162212391|gb|FC388119.1|FC388119
genomic: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAAgttcgtctct ... ttatgtacagGTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGG
EST: ATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAA GTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGGEST: gi|162156191|gb|FC332566.1|FC332566
genomic: ATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAAgttcgtctct ... ttatgtacagGTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGG
EST: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAA GTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGGEST: gi|162237926|gb|FC412527.1|FC412527
genomic: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAAgttcgtctct ... ttatgtacagGTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGG
EST: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAA GTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGGEST: gi|37833531|gb|BJ591543.1|BJ591543
genomic: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAAgttcgtctct ... ttatgtacagGTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGG
EST: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAA GTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGGEST: gi|162158208|gb|FC335251.1|FC335251
genomic: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAAgttcgtctct ... ttatgtacagGTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGG
EST: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAA GTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGG
genomic: ATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAAgttcgtctct ... ttatgtacagGTTCTATGCAAACTCACCAGACTGGTCTGTATTCCGAGAGTCAAGTTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACCGTAGGTGATGGAGGCAATCGAGAAGGTCTAGCTAGAAAgttcgtctcttaccctcaaaagctgagacttttagccactgttttatagattagggtggtgattcctgcttgtgactgaccttttaccattgcaacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG