1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGATCACCCAAATTGGCTGTGACTCAGTATTACAACCATTTAACCGAGTGCAAGCTGACATATTGAGCTGCATGAACTTCATCTTGTGCACATAGCTGgtaaaccatttgatgacggtcatgatggtccttcacagctagaatggtctaaaccttcagttgagattgttctgattcaagtcctaacaatggacgctgactttgatttatgcctgggcatgcag
species | Physcomitrella patens |
transcript | PP1S49_275V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCAAGCTGACATATTGAGCTGCATGAACTTCATCTTGTGCACATAGCTG GCGACTTGAATAGCAGCACGTCCCTTTTACAGGTTCACTCTTCCACATCACEST: gi|162157107|gb|FC333677.1|FC333677
genomic: TGCAAGCTGACATATTGAGCTGCATGAACTTCATCTTGTGCACATAGCTGgtaaaccatt ... gggcatgcagGCGACTTGAATAGCAGCACGTCCCTTTTACAGGTTCACTCTTCCACATCAC
EST: TGCAAGCTGACATATTGAGCTGCATGAACTTCATCTTGTGCACATAGCTG GCGACTTGAATAGCAGCACGTCCCTTTTACAGGTTCACTCTTCCACATCACEST: gi|67698376|gb|BJ958609.1|BJ958609
genomic: TGCAAGCTGACATATTGAGCTGCATGAACTTCATCTTGTGCACATAGCTGgtaaaccatt ... gggcatgcagGCGACTTGAATAGCAGCACGTCCCTTTTACAGGTTCACTCTTCCACATCAC
EST: TGCAAGCTGACATATTGAGCTGCATGAACTTCATCTTGTGCACATAGCTG GCGACTTGAATAGCAGCACGTCCCTTTTACAGGTTCACTCTTCCACATCAC
genomic: TGCAAGCTGACATATTGAGCTGCATGAACTTCATCTTGTGCACATAGCTGgtaaaccatt ... gggcatgcagGCGACTTGAATAGCAGCACGTCCCTTTTACAGGTTCACTCTTCCACATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATCACCCAAATTGGCTGTGACTCAGTATTACAACCATTTAACCGAGTGCAAGCTGACATATTGAGCTGCATGAACTTCATCTTGTGCACATAGCTGgtaaaccatttgatgacggtcatgatggtccttcacagctagaatggtctaaaccttcagttgagattgttctgattcaagtcctaacaatggacgctgactttgatttatgcctgggcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC