1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATTGACCCCAGCGTTACAATGATGACAGTGGAGGAAAAGCCAGATGTCACCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaaccaactttattgctttcacatattttctaatgctttgttcgactacatgtttgtgatttgatgcgatattacgatatgaagctcaccccg...
species | Physcomitrella patens |
transcript | PP1S49_256V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAG GTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATTEST: gi|208348229|gb|DC905485.1|DC905485
genomic: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATT
EST: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAG GTGGTGGAGTTGCCA-TGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATTEST: gi|67727435|gb|BJ977694.1|BJ977694
genomic: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATT
EST: CAAATAGAAAAGATGCGTGAG GTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATTEST: gi|67507498|gb|BJ940380.1|BJ940380
genomic: CAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATT
EST: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAG GTGGTGGAGTTGCCAATGTTGCATCCTGAGEST: gi|208375716|gb|DC936656.1|DC936656
genomic: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAG
EST: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAG GTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATNGGGAATTEST: gi|100445251|gb|BY982880.1|BY982880
genomic: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATT
EST: CTACA-TGATNAT-GGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAG GGTGGTGGAGTTGCCAAEST: gi|100385842|gb|BY951036.1|BY951036
genomic: -TACAATGAT-ATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagG-TGGTGGAGTTGCCAA
EST: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAANAGATGCGTGAG GTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATTEST: gi|208397607|gb|DC912225.1|DC912225
genomic: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATT
EST: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAG GTGGTGGANTTGCCAATGTTGCATCCTGAEST: gi|208387130|gb|DC941302.1|DC941302
genomic: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGA
EST: CTACAATGAATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAG GTGGTGGAGTTGCCA-TGTTGCATCCTGAGAN-TTCGTGAA-TTGGNANT-EST: gi|100352668|gb|BY945387.1|BY945387
genomic: CTACAATGA-TATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATT
EST: CCTACAATGATATTGGTGGCTGTNAAGAGCAAATAGAAAAGATGCGTGAG GTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATTEST: gi|100352747|gb|BY945428.1|BY945428
genomic: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATT
EST: CCTACNATGATATTGGTGGCTGTNAAGAGCAAATAGAAAAGATGCGTGAG GTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGGATT
genomic: CCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaa ... tactgaatagGTGGTGGAGTTGCCAATGTTGCATCCTGAGAAGTTCGTGAAATTGGGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGACCCCAGCGTTACAATGATGACAGTGGAGGAAAAGCCAGATGTCACCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaaccaactttattgctttcacatattttctaatgctttgttcgactacatgtttgtgatttgatgcgatattacgatatgaagctcaccccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG