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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGTACTTTTGCGACGCCTGTAAATCAACAGGCATTAGCTCTGGGTGCCGACCTCGTACTTCACTCTGCGACGAAGTACCTCGCCGGGCACAACGATgtgggttaaccatacaattgtttgaatttgtcattgatagatgatcaccatagttagcatagctttttgtattgtgagattcagtttgtcttgtgagtat...

Basic information

species Physcomitrella patens
transcript PP1S49_246V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162198912|gb|FC372939.1|FC372939
EST:     ACGAAGTACCTCGCCGGGCACAACGAT                         GTACTGGCAGGAAGTCTCAGCGGGTCCAAACAATGCCTTTCTGCTGTGCGA
genomic: ACGAAGTACCTCGCCGGGCACAACGATgtgggttaac ... tttcattcagGTACTGGCAGGAAGTCTCAGCGGGTCCAAACAATGCCTTTCTGCTGTGCGA
EST: gi|162198913|gb|FC372940.1|FC372940
EST:     CCGACCTCGTACTTCACTCTGCGACGAAGTACCTCGCCGGGCACAACGAT                         GTACTGGCAGGAAGTCTCAGCGGGTCCAAACAATGCCTTTCTGCTGTGCGA
genomic: CCGACCTCGTACTTCACTCTGCGACGAAGTACCTCGCCGGGCACAACGATgtgggttaac ... tttcattcagGTACTGGCAGGAAGTCTCAGCGGGTCCAAACAATGCCTTTCTGCTGTGCGA
EST: gi|162164565|gb|FC341860.1|FC341860
EST:     ACGAAGTACCTCGCCGGGCACAACGAT                         GTACTGGCAGGAAGTCTCAGCGGGTCCAAACAATGCCTTTCTGCTGTGCGA
genomic: ACGAAGTACCTCGCCGGGCACAACGATgtgggttaac ... tttcattcagGTACTGGCAGGAAGTCTCAGCGGGTCCAAACAATGCCTTTCTGCTGTGCGA
EST: gi|162156222|gb|FC332597.1|FC332597
EST:     CTCGCCGGGCACAACGAT                         GTACTGGCAGGAAGTCTCAGCGGGTCCAAACAATGCCTTTCTGCTGTGCGA
genomic: CTCGCCGGGCACAACGATgtgggttaac ... tttcattcagGTACTGGCAGGAAGTCTCAGCGGGTCCAAACAATGCCTTTCTGCTGTGCGA