1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGGAAGATTCTTGTGGCCGGGGCTCACGCCAACGACATCGGCTTGCAGTGCGGAGGCTGGACCATCAGCTGGCAAGGCATGCCTGGAAACATCACAAAAGgtcgctccaaattcccaacactcctattccaacttacctcacgaccacttttttctttttttttcttttttttaaaaatctttttggggccttcagtatctcacttgaaatctcgtttcacag
species | Physcomitrella patens |
transcript | PP1S49_195V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGGAGGCTGGACCATCAGCTGGCAAGGCATGCCTGGAAACATCACANAAG GAACAACCATTTTGGAEST: gi|162169340|gb|FC345502.1|FC345502
genomic: CGGAGGCTGGACCATCAGCTGGCAAGGCATGCCTGGAAACATCACAAAAGgtcgctccaa ... cgtttcacagGAACAACCATTTTGGA
EST: CGGAGGCTGGACCATCAGCTGGCAAGGCATGCCTGGAAACATCACAAAAG GAACAACCATTTTGGAAGGCATCAAGCAAACAGTAGACTCCAACACGAAGGEST: gi|162169339|gb|FC345501.1|FC345501
genomic: CGGAGGCTGGACCATCAGCTGGCAAGGCATGCCTGGAAACATCACAAAAGgtcgctccaa ... cgtttcacagGAACAACCATTTTGGAAGGCATCAAGCAAACAGTAGACTCCAACACGAAGG
EST: CGGAGGCTGGACCATCAGCTGGCAAGGCATGCCTGGAAACATCACAAAAG GAACAACCATTTTGGAAGGCATCAAGCAAACAGTAGACTCCAACACGAAGG
genomic: CGGAGGCTGGACCATCAGCTGGCAAGGCATGCCTGGAAACATCACAAAAGgtcgctccaa ... cgtttcacagGAACAACCATTTTGGAAGGCATCAAGCAAACAGTAGACTCCAACACGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAAGATTCTTGTGGCCGGGGCTCACGCCAACGACATCGGCTTGCAGTGCGGAGGCTGGACCATCAGCTGGCAAGGCATGCCTGGAAACATCACAAAAGgtcgctccaaattcccaacactcctattccaacttacctcacgaccacttttttctttttttttcttttttttaaaaatctttttggggccttcagtatctcacttgaaatctcgtttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG