1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAACTGAGTGATTCTACCGTAACACATCTCATATGCAGCATCAAACAGTTCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAGgtatctaaacgtcacttcattttggaggagcttgtcgttattattattattattattattattttttgttgttggtctgttttgtttagatggttgaatt...
species | Physcomitrella patens |
transcript | PP1S49_182V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAG GTGTTAGACCTAGTCTCAAGTAATGGCCCCGATGCACTTGGACTTTCGGGAEST: gi|162195630|gb|FC370293.1|FC370293
genomic: TCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAGgtatctaaac ... gtttatacagGTGTTAGACCTAGTCTCAAGTAATGGCCCCGATGCACTTGGACTTTCGGGA
EST: TCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAG GTGTTAGACCTAGTCTCAAGTAATGGCCCCGATGCACTTGGACTTTCGGGAEST: gi|37851068|gb|BJ609076.1|BJ609076
genomic: TCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAGgtatctaaac ... gtttatacagGTGTTAGACCTAGTCTCAAGTAATGGCCCCGATGCACTTGGACTTTCGGGA
EST: TCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAG GTGTTAGACCTAGTCTCAAGTAATGGCCCCGATGCACTTGGACTTTCGGGAEST: gi|100386997|gb|BY951396.1|BY951396
genomic: TCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAGgtatctaaac ... gtttatacagGTGTTAGACCTAGTCTCAAGTAATGGCCCCGATGCACTTGGACTTTCGGGA
EST: TCCTTCAGCAGCAGAGCTTCTTGGATTGCATAAATCCCTGGATTCAGCAG GTGTTAGACCTAGTCTCAAGTTATGGCCCCGATGCACTTGGACTTTCGG
genomic: TCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAGgtatctaaac ... gtttatacagGTGTTAGACCTAGTCTCAAGTAATGGCCCCGATGCACTTGGACTTTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAACTGAGTGATTCTACCGTAACACATCTCATATGCAGCATCAAACAGTTCCTTCAGCAGCAGAGCTTCTTGGATTGCATAATTCCCTGGATTCAGCAGgtatctaaacgtcacttcattttggaggagcttgtcgttattattattattattattattattttttgttgttggtctgttttgtttagatggttgaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT