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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCTCAGAAAGGGCGAAGCGTACGGGTGCCGTTGGCATGCGTTTCAAAGAGTCTGTTACTATCAACTGTGGTCTGCTTGCTTTAGGCAATGTCATAAGgtaatatttgtaagctgtcattatttcattgatgtccttaccagtgttgcaattctttcacttcatttggcaccgatggcttgtatcagtatgtgatggatcctctgcaaatcttgtgttcataaattatttttgtatcagcaaaccaatttacttatttctaggaagtttgatattggcttactgtaacatgtgtag

Basic information

species Physcomitrella patens
transcript PP1S47_261V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_261V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ34540 (Selaginella moellendorffii), 5'ss of exon 5
CAGGCTCAGAAAGGGCGAAGCGTACGGGTGCCGTTGGCATGCGTTTCAAAGAGTCTGTTACTATCAACTGTGGTCTGCTTGCTTTAGGCAATGTCATAAGgta-atatttg---taagctgtcattatttcattgatgtccttaccagtgttgcaattctttcacttcatttggcaccgatggcttgtatcagtatgtgatggatcctctgcaaatcttgtgttcataaattatttttgtatcagcaaaccaatttacttatttctaggaagtttgatattggcttactgtaacatgtgtag
| || |||||  | || ||  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||  | ||| | || || || || |||||  || ||    || |   | |     |||| ||||  |||  ||  |                                                                                                                                                        
CTGGTTCAGAGCGTGCAAAAAGGACTGGAGCCGTAGGCATGCGTTTCAAAGAATCGGTAACTATCAACTGCGGGCTTTTAGCTCTTGGAAACGTTATCAGgtatgtagttccactaggaaataaaatactcatggatggtcttttcacag--------------------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S47_261V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ10118 (Selaginella moellendorffii), 5'ss of exon 5
CAGGCTCAGAAAGGGCGAAGCGTACGGGTGCCGTTGGCATGCGTTTCAAAGAGTCTGTTACTATCAACTGTGGTCTGCTTGCTTTAGGCAATGTCATAAGgta-atatttg---taagctgtcattatttcattgatgtccttaccagtgttgcaattctttcacttcatttggcaccgatggcttgtatcagtatgtgatggatcctctgcaaatcttgtgttcataaattatttttgtatcagcaaaccaatttacttatttctaggaagtttgatattggcttactgtaacatgtgtag
| || |||||  | || ||  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||  | ||| | || || || || |||||  || ||    || |   | |     |||| ||||  |||  ||  |                                                                                                                                                        
CTGGTTCAGAGCGTGCAAAAAGGACTGGAGCCGTAGGCATGCGTTTCAAAGAATCGGTAACTATCAACTGCGGGCTTTTAGCTCTTGGGAACGTTATCAGgtatgtagttccactaggaaataaaatactcatggatggtcttttcacag--------------------------------------------------------------------------------------------------------------------------------------------------------