1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTCTCTCTAAACGTATACACTATGGCAAGTTCGTGGCGGAGGCGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcccgctctttctttcaccctctaagtagtatccagacagtaggtaagctaagaggccgtttgcatgcgaccctgtgagtagaatcagcgtgg...
species | Physcomitrella patens |
transcript | PP1S47_23V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTNGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|208382438|gb|DC927972.1|DC927972
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|162223996|gb|FC400354.1|FC400354
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|208352569|gb|DC918278.1|DC918278
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|18335067|gb|BJ167085.1|BJ167085
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|208354231|gb|DC957437.1|DC957437
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|37850774|gb|BJ608782.1|BJ608782
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: GAAGTTCATAGAGGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|18340006|gb|BJ172034.1|BJ172034
genomic: GAAGTTCATAGA-GGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|162223997|gb|FC400355.1|FC400355
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|18332684|gb|BJ164697.1|BJ164697
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: TGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAATEST: gi|208351995|gb|DC925804.1|DC925804
genomic: TGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
EST: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAG GATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
genomic: CGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcc ... gcgattacagGATGGAGATGCAATATTGAGAGAATTAACCTTCAAAAATGTAGAAGACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTCTCTAAACGTATACACTATGGCAAGTTCGTGGCGGAGGCGAAGTTCATAGAGGATCCTGCGAGGTTTGAGGGCCATATCAAGGCGCAGgtacggtgcccgctctttctttcaccctctaagtagtatccagacagtaggtaagctaagaggccgtttgcatgcgaccctgtgagtagaatcagcgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT