1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTGTTTCCAATCAAGAAGGAGCTTCTACATCCTCAGGAGGAAATGGAACGGCACATAACAGATCTCATAAAAAAGgtcagttagttggtttttgagttttttgaagttgttatgtctacggtgtaattatcatcaagaactgtccctgtttgtcaccgattatgttgctggggaa...
species | Physcomitrella patens |
transcript | PP1S47_196V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACATCCTCAGGAGGAAATGGAACGGCACATAACAGATCTCATAANAAAG TGTCTTCAAGATGTGACAGGAGCEST: gi|162177459|gb|FC353720.1|FC353720
genomic: TACATCCTCAGGAGGAAATGGAACGGCACATAACAGATCTCATAAAAAAGgtcagttagt ... ggtgatgcagTGTCTTCAAGATGTGACAGGAGC
EST: TACATCCTCAGGAGGAAATGGAACGGCACATAACAGATCTCATAAAAAAG TGTCTTCAAGATGTGACAGGAGCAGAGTTTAAGATGTTCATGGACTTTCTTEST: gi|162186312|gb|FC361620.1|FC361620
genomic: TACATCCTCAGGAGGAAATGGAACGGCACATAACAGATCTCATAAAAAAGgtcagttagt ... ggtgatgcagTGTCTTCAAGATGTGACAGGAGCAGAGTTTAAGATGTTCATGGACTTTCTT
EST: TACATCCTCAGGAGGAAATGGAACGGCACATAACAGATCTCATAAAAAAG TGTCTTCAAGATGTGACAGGAGCAGAGTTTAAGATGTTCATGGACTTTCTT
genomic: TACATCCTCAGGAGGAAATGGAACGGCACATAACAGATCTCATAAAAAAGgtcagttagt ... ggtgatgcagTGTCTTCAAGATGTGACAGGAGCAGAGTTTAAGATGTTCATGGACTTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTCCAATCAAGAAGGAGCTTCTACATCCTCAGGAGGAAATGGAACGGCACATAACAGATCTCATAAAAAAGgtcagttagttggtttttgagttttttgaagttgttatgtctacggtgtaattatcatcaagaactgtccctgtttgtcaccgattatgttgctggggaa
- - - - - - - - - - - - - - - - - GGAGGA