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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGGAGCTTAACCTTAATAAAGTGTATGTGCCTTTGCTTGTTGATGATTTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttatttcacccacctattatatattcattagagttttatggaccgtatgtgtcttggtactttccaatactgaaacccctagcttgtgcttcactatagagatgtataccttctcttccatccactttcattcttaacgccgatgccgctgatgcgaaatgtcactcatctcttttaagtggaacgctgcag

Basic information

species Physcomitrella patens
transcript PP1S47_18V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162209036|gb|FC385588.1|FC385588
EST:     TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAG                         CGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
genomic: TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttattt ... aacgctgcagCGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
EST: gi|162229412|gb|FC405603.1|FC405603
EST:     TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAG                         CGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
genomic: TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttattt ... aacgctgcagCGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
EST: gi|162169731|gb|FC345268.1|FC345268
EST:     TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAG                         CGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
genomic: TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttattt ... aacgctgcagCGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
EST: gi|162214492|gb|FC391459.1|FC391459
EST:     TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAG                         CGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
genomic: TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttattt ... aacgctgcagCGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
EST: gi|18327807|gb|BJ159811.1|BJ159811
EST:     TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAG                         CGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
genomic: TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttattt ... aacgctgcagCGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
EST: gi|162159094|gb|FC334889.1|FC334889
EST:     TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAG                         CGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
genomic: TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttattt ... aacgctgcagCGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
EST: gi|162158873|gb|FC335396.1|FC335396
EST:     TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAG                         CGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
genomic: TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttattt ... aacgctgcagCGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
EST: gi|162173166|gb|FC349233.1|FC349233
EST:     TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAG                         CGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA
genomic: TTCAACAAATTCATGAACGTGTTTAACCGTCCCGATTTTCATGGTTTCAGgtacttattt ... aacgctgcagCGTTACGATACCATACAAGGAAGATGCACTGAAGCTGTGTGATAGGGTTGA