1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGTTGGATAAGTTGGAGTCAGTTCTGGAGCCGCTTTTGTACATGTGGAGAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAGgtgcgtcttctagctcttgaatcaaagttttgatacatagacttttgagttagttggatggtgagcatcttgcactgcattagaagttatgtgaggattt...
species | Physcomitrella patens |
transcript | PP1S47_171V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAG GGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAAEST: gi|162192176|gb|FC368325.1|FC368325
genomic: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAGgtgcgtcttc ... ctgttcacagGGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAA
EST: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAG GGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAAEST: gi|162196654|gb|FC373800.1|FC373800
genomic: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAGgtgcgtcttc ... ctgttcacagGGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAA
EST: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAG GGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAAEST: gi|162165566|gb|FC341405.1|FC341405
genomic: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAGgtgcgtcttc ... ctgttcacagGGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAA
EST: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAG GGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAAEST: gi|67693109|gb|BJ953342.1|BJ953342
genomic: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAGgtgcgtcttc ... ctgttcacagGGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAA
EST: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAG GGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAAEST: gi|22492369|gb|BU052292.1|BU052292
genomic: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAGgtgcgtcttc ... ctgttcacagGGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAA
EST: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAG GGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAA
genomic: GAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAGgtgcgtcttc ... ctgttcacagGGTTTCGGTGCTTTGAAGAGTTACATCGAGAACTATACAGGTCCCCGCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTGGATAAGTTGGAGTCAGTTCTGGAGCCGCTTTTGTACATGTGGAGAACTGAGCGTCGTGAGGATGAGTCGTTTGGCGACTTTTCTTTCAGACAGgtgcgtcttctagctcttgaatcaaagttttgatacatagacttttgagttagttggatggtgagcatcttgcactgcattagaagttatgtgaggattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG