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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGGGTGCATTTTTCGTCTCCATCTTCTTGCCAGTGCAAACGCTGGTGGTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgccatccgtcgcttctatatttgagccgacttttgttgcatatattagtaactatcacaagtctcacttgatgtcccaacttaacttggctgaccctgtttcatttcctctattgagcgtttttggacaatatggtgcag

Basic information

species Physcomitrella patens
transcript PP1S46_43V6.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208396765|gb|DC929060.1|DC929060
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|37831545|gb|BJ589557.1|BJ589557
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|162185616|gb|FC362029.1|FC362029
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|37837339|gb|BJ595347.1|BJ595347
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|37831150|gb|BJ589162.1|BJ589162
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|208380165|gb|DC927444.1|DC927444
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|208362740|gb|DC950540.1|DC950540
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|18338090|gb|BJ170114.1|BJ170114
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|37821201|gb|BJ579267.1|BJ579267
EST:     GTGGCTGTTCAGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|37833806|gb|BJ591818.1|BJ591818
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|37823393|gb|BJ581459.1|BJ581459
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: gi|37835190|gb|BJ593202.1|BJ593202
EST:     GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT                         CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACGGGTGCATTTTTCGTCTCCATCTTCTTGCCAGTGCAAACGCTGGTGGTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgccatccgtcgcttctatatttgagccgacttttgttgcatatattagtaactatcacaagtctcacttgatgtcccaacttaacttggctgaccctgtttcatttcctctattgagcgtttttggacaatatggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT