1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCTTCATATTGTTATCGTGCACACTTGCTGTTTTCTGCAATGTGAGTCAATACTTGTGCATTGGAAGATTCTCAGCTGTGACATTCCAGgtgagtattggtaacactagcgaaacctgattgtattggtgaacacttgcaaccgtgctcctgcgtttgaaatttaatttttgaacgcttaactcctgaatctcaacctccttggaaccaaagcctgcatttaatacagtactgaggcttcaattgcatgtggatatag
species | Physcomitrella patens |
transcript | PP1S41_21V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGTGAGTCAATACTTGTGCATTGGAAGATTCTCAGCTGTGACATTCCAG GTGTTGGGACACATGAAGACTGTGTGCGTGCTGCTCTTGGGATGGGTTCTCEST: gi|208363417|gb|DC947015.1|DC947015
genomic: ATGTGAGTCAATACTTGTGCATTGGAAGATTCTCAGCTGTGACATTCCAGgtgagtattg ... gtggatatagGTGTTGGGACACATGAAGACTGTGTGCGTGCTGCTCTTGGGATGGGTTCTC
EST: TCAGCTGTGACGTTCCAG GTGTTGGGACACATGAAGACTGTGTGCGTGCTGCTCTTGGGATGGGTTCTC
genomic: TCAGCTGTGACATTCCAGgtgagtattg ... gtggatatagGTGTTGGGACACATGAAGACTGTGTGCGTGCTGCTCTTGGGATGGGTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTTCATATTGTTATCGTGCACACTTGCTGTTTTCTGCAATGTGAGTCAATACTTGTGCATTGGAAGATTCTCAGCTGTGACATTCCAGgtgagtattggtaacactagcgaaacctgattgtattggtgaacacttgcaaccgtgctcctgcgtttgaaatttaatttttgaacgcttaactcctgaatctcaacctccttggaaccaaagcctgcatttaatacagtactgaggcttcaattgcatgtggatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG